Ethionamide (ETH) needs to be activated by the mono-oxygenase EthA, which is regulated by EthR, in order to be active against Mycobacterium tuberculosis. The activated drug targets the enzyme InhA, which is involved in cell wall biosynthesis. Resistance to ETH has been reported to result from various mechanisms, including mutations altering EthA/EthR, InhA and its promoter, the NADH dehydrogenase encoded by ndh, and the MshA enzyme, involved in mycothiol biosynthesis. r isolates without a mutation in these three genes (9/47, 19%) had no mutation in ndh, and a single isolate had a mutation in mshA. Of the 16 ETH Sip isolates, 7 had a mutation in ethA, 8 had no detectable mutation, and 1 had a mutation in mshA. Finally, of the 24 ETH s isolates, 23 had no mutation in the studied genes and 1 displayed a yet unknown mutation in the inhA promoter. Globally, the mechanism of resistance to ETH remained unknown for 19% of the ETH r isolates, highlighting the complexity of the mechanisms of ETH resistance in M. tuberculosis.Ethionamide (ETH), a second-line antituberculous drug, is a structural thioamide analogue of isoniazid (INH), the cornerstone of front-line tuberculosis (TB) treatment. ETH is considered to be the most active antituberculous drug after aminoglycosides and fluoroquinolones and is a component of most of the drug regimens used for treating multidrug-resistant (MDR) TB (MDR-TB) or suspected MDR-TB (25, 32). To date, drug susceptibility testing (DST) for ETH relies mainly on phenotypic tests because the molecular mechanisms of ETH resistance are not fully understood. In vitro phenotypic investigation of ETH resistance is experimentally difficult and can yield discordant results according to the experimental method and resistance breakpoint values used, which still remain matters of debate (26). Therefore, a genotypic approach would be of great value to improve and hasten DST and the management of MDR-TB, as well as reduce the proportion of patients inadequately treated on the basis of erroneous DST results, consequently limiting the emergence of extensively drug-resistant tuberculosis among patients treated for MDR-TB.ETH and INH share the same molecular target, the NADHdependent enoyl-acyl carrier protein reductase InhA of the fatty acid biosynthesis type II system, which is involved in the synthesis of mycolic acids (2, 19). Consequently, cross-resistance to these two antibiotics can be observed in clinical isolates. However, though ETH is a structural analogue of INH, cross-resistance between ETH and INH does not occur systematically. Strains with low-level resistance to INH frequently display low-level ETH resistance, whereas high-level INH-resistant (INH r ) strains typically remain ETH susceptible (ETH s ) (6,7,21). This apparent paradox is due to the fact that INH and ETH are prodrugs that need to be activated by mycobacterial enzymes in order to exert their antimicrobial activity, with each drug being activated by a specific mechanism. INH is activated by the katG-encoded catalase-peroxidase (33), ...