Climate change is significantly affecting mountain plant communities, causing dynamic alterations in species composition as well as spatial distribution. This raises the need for constant monitoring. The Tatra Mountains are the highest range of the Carpathians which are considered biodiversity hotspots in Central Europe. For this purpose, microwave Sentinel-1 and optical multi-temporal Sentinel-2 data, topographic derivatives, and iterative machine learning methods incorporating classifiers random forest (RF), support vector machines (SVMs), and XGBoost (XGB) were used for the identification of thirteen non-forest plant communities (various types of alpine grasslands, shrublands, herbaceous heaths, mountain hay meadows, rocks, and scree communities). Different scenarios were tested to identify the most important variables, retrieval periods, and spectral bands. The overall accuracy results for the individual algorithms reached RF (0.83–0.96), SVM (0.87–0.93), and lower results for XGBoost (0.69–0.82). The best combination, which included a fusion of Sentinel-1, Sentinel-2, and topographic data, achieved F1-scores for classes in the range of 0.73–0.97 (RF) and 0.66–0.95 (SVM). The inclusion of topographic variables resulted in an improvement in F1-scores for Sentinel-2 data by one–four percent points and Sentinel-1 data by 1%–9%. For spectral bands, the Sentinel-2 10 m resolution bands B4, B3, and B2 showed the highest mean decrease accuracy. The final result is the first comprehensive map of non-forest vegetation for the Tatra Mountains area.