Central Pamir-Alai, which is located almost entirely within the area of Tajikistan, is one of the world hotspots of biodiversity, harbouring ca. 4,300 species and 1,400 endemic plants. The first application of the IUCN Red List criteria reveals that among all native species occurring in Tajikistan 1,627 taxa (38.11%) are threatened, including 23 extinct (0.54%), 271 (6.34%) critically endangered (CR), 717 (16.79%) endangered (EN) and 639 (14.96%) vulnerable (VU). Globally, 20 taxa are extinct, 711 (16.65%) threatened, including 144 (3.37%) critically endangered, 322 (7.54%) endangered and 245 (5.73%) vulnerable. As we found positive correlation between human density and the number of threatened species, we suspect this indirect factor responsible for the species diversity decline. Extinct or threatened taxa have short blooming periods in spring or early summer, have limited geographical range and inhabit mainly valley bottoms at lower altitudes. Threatened taxa occupy extremely dry or wet habitats, such as deserts, semi-deserts, water reservoirs and fens. The group of threatened plants consists mostly of Central Asian, Indo-Indochinese and Arctic species. Ornamental plants have a higher extinction risk than other plants, but species collected for medicinal reasons and used for forage or food reveal lower retreatment rate. Our assessment fills a gap for important plant area and provides the data for raising the effectiveness of plant diversity conservation. Species diversity loss still remains one of the main imperatives of our time and therefore one of the main topics of scientific studies. Currently, hundreds of plant species and many habitat types are globally threatened 1,2. A range of factors are responsible for these declines, with human population growth, habitat fragmentation and climate change regarded as the most crucial 3. The continuing decline of plant diversity demands continuous research on evaluation of the conservation status of flora with the use of comprehensive International Union for Conservation of Nature (IUCN) criteria (www.iucnredlist.org). These criteria are widely recognised as the most comprehensive tool for assessing the global conservation status of species and categorising plants according to their estimated risk of extinction (e.g. Orsenigo et al. 4 , Maes et al. 5). As the most effective conservation actions, policies and law implementation take place at the national scale, numerous countries have established national lists of threatened species with the use of IUCN criteria and guidelines at regional levels (Rossi et al. 6). Despite some biases and shortcomings of scientific foundations 7 , red lists are widely accepted as an appropriate measure for setting conservation priorities. In some countries, including Tajikistan, they also have a legal status and directly influence the state governance of the plant diversity 8. However, based on the information available in the National Red List Database 9 , almost 20% of Eurasian countries still have no available red lists for vascular p...