Fluoroquinolones are some of the most prescribed antibiotics in the United States. Previously, we and others showed that the fluoroquinolones exhibit a class effect with regard to the CLSI-established breakpoints for resistance, such that decreased susceptibility (i.e., an increased MIC) to one fluoroquinolone means a simultaneously decreased susceptibility to all. For defined strains, however, clear differences exist in the pharmacodynamic properties of each fluoroquinolone and the extent to which resistance-associated genotypes affect the MICs of each fluoroquinolone. In a pilot study of 920 clinical Escherichia coli isolates, we uncovered tremendous variation in norfloxacin MICs. The MICs for all of the fluoroquinolone-resistant isolates exceeded the resistance breakpoint, reaching 1,000 g/ml. Approximately 25% of the isolates (n ؍ 214), representing the full range of resistant norfloxacin MICs, were selected for the simultaneous determinations of ciprofloxacin, gatifloxacin, levofloxacin, and norfloxacin MICs. We found that (i) great MIC variation existed for all four fluoroquinolones, (ii) the ciprofloxacin and levofloxacin MICs of >90% of the fluoroquinolone-resistant isolates were higher than the resistance breakpoints, (iii) ciprofloxacin and levofloxacin MICs were distributed into two distinct groups, (iv) the MICs of two drug pairs (ciprofloxacin and norfloxacin by Kendall's Tau-b test and gatifloxacin and levofloxacin by paired t test) were similar with statistical significance but were different from each other, and (v) ϳ2% of isolates had unprecedented fluoroquinolone MIC relationships. Thus, although the fluoroquinolones can be considered equivalent with regard to clinical susceptibility or resistance, fluoroquinolone MICs differ dramatically for fluoroquinolone-resistant clinical isolates, likely because of differences in drug structure.Fluoroquinolones, some of the most frequently prescribed antimicrobial agents worldwide, target the bacterial type II topoisomerases gyrase and topoisomerase IV. Type II topoisomerases are essential, ubiquitous enzymes involved in virtually every aspect of DNA metabolism. These enzymes cleave one DNA double helix, pass a second DNA molecule (or a different region of the first DNA molecule) through the break, and religate the broken DNA. Fluoroquinolones increase the longevity of the normally short-lived cleaved DNA-topoisomerase intermediates (reviewed in reference 7). DNA tracking machinery somehow is affected by these intermediates, resulting in multiple subsequent effects, such as chromosome fragmentation, the inhibition of DNA synthesis, and death (reviewed in reference 6).With regard to susceptibility or resistance defined by CLSI breakpoints (Table 1), the fluoroquinolones appear to exemplify a class effect, such that any decrease in susceptibility (i.e., increased MIC) to one drug means a simultaneous decrease for all (2). The fluoroquinolones, however, vary with regard to pharmacokinetic and pharmacodynamic parameters, including potency (reviewed in refer...