“…Sex-specific splicing of dsx and fru depends on the activities of multiple conserved 13-nt ESE elements that are recognized by Tra and Tra2+ Because the dsxRE and fru RE activate the recognition of a 39 and a 59 splice site, respectively, it is possible that certain ESEs recruit more than one spliceosomal component to the exon+ To test this hypothesis, we generated a heterologous pre-mRNA (fru59ss/dsx39ssMS2) gene construct that contains the regulated female-specific fru 59 splice site and the weak female-specific dsx 39 splice site on different exons (Fig+ 1A)+ Because each of these splice sites is poorly recognized in its natural context and limits the efficiency of spliceosome assembly (Ryner & Baker, 1991;Tian & Maniatis, 1992; Heinrichs et al+, Hertel 1998), intron removal from the fru59ss/dsx39ssMS2 construct requires the juxtaposition of two suboptimal splice sites+ In this configuration, the weak female-specific fru 59 splice site in fru59ss/dsx39ssMS2 is activated by its native ESE (fru RE) that contains three 13-nt repeat elements recognized by Tra, Tra2, and an SR protein (Heinrichs & Baker, 1995;Lynch & Maniatis, 1996)+ Similar to the experimental design utilized in previous studies (Graveley & Maniatis, 1998), the weak 39 splice site of dsx in the fru59ss/dsx39ssMS2 construct is activated by specific interactions between MS2-RS fusion proteins and the MS2 binding site located approximately 70 nt downstream of the 39 splice site+ Thus, the design of the fru59ss/dsx39ssMS2 construct permits the independent activation of the fru 59 or the dsx 39 splice sites by the addition of recombinant Tra/Tra2 and/or the MS2-RS fusion protein MS2-RS 9G8 to HeLa cell nuclear cell extracts+ In vitro splicing assays were performed in the presence or absence of saturating amounts of Tra/Tra2 and/or MS2-RS 9G8 to evaluate the splicing efficiency of fru59ss/dsx39ssMS2+ For each set of conditions, the splicing reaction was followed over a period of up to 2 h+ Splicing efficiencies were derived from rate measurements as previously described (Hertel & Maniatis, 1998)+ Although no measurable spliced products were detected in the absence of these recombinant proteins, the addition of either the Transformer or MS2-RS fusion proteins resulted in a small but significant activation over background levels (Fig+ 1B, lanes 1-3)+ Kinetic analysis indicated that each enhancer complex increased intron removal by a factor of at least 10-fold over background levels (Fig+ 1C; Table 1)+ This observation is surprising because it suggests that an ESE located on one exon can positively influence the recognition of a weak splice site on a neighboring exon+ By contrast, constitutive splice sites that conform to consensus sequences without an ESE have no significant influence on weak splice sites of neighboring exons+ For example, the common 39 splice site in fru cannot positively influence recognition of the upstream weak female 59 splice site (Ryner et al+, 1996;Heinrichs et al+, 1998)+ Similarly, the constitutive 59 splice site of dsx exon 3 cannot compensate for the suboptimal 39 splice site of exon 4 (Ryner & Baker, 1991;…”