We compared the BD GeneOhm methicillin-resistant Staphylococcus aureus (MRSA) PCR assay to culture with BBL CHROMagar MRSA for nasal surveillance among 602 arrestees from the Baltimore City Jail. The sensitivity and specificity were 88.5% and 91.0%, respectively, and after secondary analysis using enrichment broth, they were 89.0% and 91.7%, respectively. Twenty-three of 42 false-positive PCR lysates contained methicillin-susceptible S. aureus.Recent community-associated methicillin-resistant Staphylococcus aureus (MRSA) outbreaks among correctional institution populations have demonstrated the need for improved surveillance (3)(4)(5)17). MRSA surveillance is essential to limit transmission and stem future outbreaks in this setting. While rapid diagnostic testing has been successfully implemented within the health care setting (1,6,10,22), such testing will likely present technical and logistical difficulties for correctional facilities.Trypticase soy broth (TSB) with 6.5% NaCl is considered the reference method for recovery of MRSA from nasal surveillance cultures (20). This method is not timely for programs that wish to implement rapid screening. Selective and differential media such as BBL CHROMagar MRSA (CHROM-MRSA) (BD Diagnostics, Sparks, MD) decrease the time to identification of MRSA from 2 or 3 days to 24 to 48 h, require limited training, and are relatively inexpensive compared to molecular methods (11; BBL CHROMagar MRSA package insert, http://www.bd.com/ds/productCenter/215084.asp). In a multicenter study comparing CHROM-MRSA to conventional culture using 5% sheep blood agar and five methods of susceptibility testing, CHROM-MRSA detected an additional 8% positive samples (11). The performance characteristics of chromogenic media compared with PCR have not been well studied. The BD GeneOhm MRSA PCR assay (BD GeneOhm, San Diego, CA) has proven effective for MRSA surveillance (2, 9, 11, 18) but is currently more costly than CHROM-MRSA.An epidemiologic study of MRSA nasal colonization among newly arrested men provided the opportunity to compare the performance characteristics of these methods for MRSA surveillance.(This study was presented in part at the 107th General Meeting of the American Society for Microbiology, Toronto, Canada, 21 to 25 May 2007.)Subject selection and collection of clinical specimens. The Maryland Department of Corrections and the Institutional Review Board of The Johns Hopkins University School of Medicine approved the study. Enrollment criteria included (i) arrested Ͻ24 h previously, (ii) male, (iii) age 21 years and older, and (iv) processed at the Central Booking Intake Facility in Baltimore, MD. Anterior nasal specimens were obtained using BactiSwab II dual-headed culturettes (Remel, Lenexa, KS) from 602 men. Both swabs were inserted into each nare simultaneously. The swabs were transported at room temperature and stored at 5°C until processing within 24 h of collection. The two swabs were randomly separated in the laboratory. One swab was used for culture and the other for th...