An experimental model for cytoplasmic organization is presented. We demonstrate dynamic control over protein distribution within synthetic cells comprising a lipid bilayer membrane surrounding an aqueous polymer solution. This polymer solution generally exists as two immiscible aqueous phases. Protein partitioning between these phases leads to microcompartmentation, or heterogeneous protein distribution within the ''cell'' interior. This model cytoplasm can be reversibly converted to a single phase by slight changes in temperature or osmolarity, such that local protein concentrations can be manipulated within the vesicle interior.aqueous phase separation ͉ intracellular organization ͉ vesicle T he interior of living cells is a crowded milieu of macromolecules, cytoskeletal filaments, and organelles. Even in cytoplasmic regions not separated by obvious barriers such as lipid membranes, differences in local composition are common. This phenomenon, referred to as microcompartmentation, is thought to have profound implications for cell function (1, 2). Understanding its role in living cells has been complicated by the lack of an experimental model system in which hypotheses could be tested. Even the mechanism(s) by which microcompartmentation is maintained remain unclear. Several possibilities have been proposed, including specific targeting and processes driven by macromolecular crowding, such as multiprotein complex formation, binding to intracellular surfaces, or phase separation (3). Aqueous phase separation occurs readily in bulk solutions of macromolecules even at much lower weight percents than are present in living cells (2). Thus, the question has been posed as to whether cytoplasm can exist without undergoing phase separation (4). Phase separation, and the accompanying partition of solutes between phases, could account for microcompartmentation of macromolecules, metabolites, and ions. Thus far, the complexity of living cells has precluded direct testing of the phase separation hypothesis. † We have encapsulated a poly(ethylene glycol) (PEG)͞dextran aqueous two-phase system (ATPS) within lipid vesicles to construct synthetic cells capable of dynamic protein and nucleic acid microcompartmentation. Substantial local variations in protein concentration can be maintained in the absence of intervening membranous barriers within these ATPS-containing vesicles. Our synthetic cytoplasm is promising as an experimental model for intracellular organization in general and demonstrates that aqueous phase separation is a viable mechanism for microcompartmentation.This work represents a bottom-up approach to understanding cell biology, in contrast to the top-down approach often adopted in biochemistry and perhaps best exemplified by efforts to generate the ''minimal cell'' through gene disruption in already simple organisms (6). Experimental model systems such as this one enable us to begin to test hypotheses in cell biology such as that of cytoplasmic phase separation. An analogy is lipid bilayer models of cell membrane...