African women: Women of African descent are more likely to have bacterial vaginosis than women of other ethnicities. Both diversity and likely specifi c taxa in these microbial communities are important to sexual and reproductive health, such as HIV risk. However, whether the specifi c taxa also vary by geographical location and/or ethnicity requires further investigation.Here, we compare the vaginal microbiota of 16-22-year-old black, HIV-negative South African women from two geographically disparate but low-income high population density communities, one in Cape Town (CPT) and one in Johannesburg (JHB). Vaginal microbiota composition was assessed by 16S rRNA gene amplicon sequencing of lateral vaginal wall swabs.Geographical location was signifi cantly associated with vaginal microbiota composition by permutational analysis of variance (PERMANOVA) (p=0.02), as were body mass index BMI (p=0.015) and human papilloma virus (HPV) risk type (p=0.005), while the presence of one or more sexually transmitted infections (STIs) (p=0.053) and hormonal contraceptive (HC) usage (p=0.4) were not. Geographical location remained a signifi cant determinant of microbiota composition independent of BMI, STI status and HPV-risk. Together, geographical location, BMI and HPV-risk explained 10% of the variance in microbiota composition with a large proportion of the variance remaining unexplained. Several taxa differed signifi cantly between geographical location -some by frequency and others by relative abundance.Our results therefore suggest that HIV prophylactic approaches targeting the vaginal microbiota should be geographically tailored.Hoe om hierdie ar kel aan te haal: