Production of inorganic polyphosphate (polyP) by bacteria is triggered by a variety of different stress conditions. polyP is required for stress survival and virulence in diverse pathogenic microbes. Previous studies have hypothesized a model for regulation of polyP synthesis in which production of the stringent-response second messenger (p)ppGpp directly stimulates polyP accumulation. In this work, I have now shown that this model is incorrect, and (p)ppGpp is not required for polyP synthesis in Escherichia coli. However, stringent mutations of RNA polymerase that frequently arise spontaneously in strains defective in (p)ppGpp synthesis and null mutations of the stringentresponse-associated transcription factor DksA both strongly inhibit polyP accumulation. The loss of polyP synthesis in a mutant lacking DksA was reversed by deletion of the transcription elongation factor GreA, suggesting that competition between these proteins for binding to the secondary channel of RNA polymerase plays an important role in controlling polyP activation. These results provide new insights into the poorly understood regulation of polyP synthesis in bacteria and indicate that the relationship between polyP and the stringent response is more complex than previously suspected. IMPORTANCE Production of polyP in bacteria is required for virulence and stress response, but little is known about how bacteria regulate polyP levels in response to changes in their environments. Understanding this regulation is important for understanding how pathogenic microbes resist killing by disinfectants, antibiotics, and the immune system. In this work, I have clarified the connections between polyP regulation and the stringent response to starvation stress in Escherichia coli and demonstrated an important and previously unknown role for the transcription factor DksA in controlling polyP levels. KEYWORDS (p)ppGpp, DksA, inorganic polyphosphate, stringent response B acteria in nature are rarely found under conditions that are ideal for their growth, and they regulate their gene expression and metabolism to optimize growth and survival under a variety of nonoptimal conditions (1-5). This is known as "stress response" and is key to understanding, for example, how pathogenic bacteria resist attack by antibiotics or the immune system. The intricate regulatory mechanisms that bacteria use to sense and respond to various stresses have been the subject of intense study for many years. While different bacteria have a wide variety of transcription factors and other regulators that sense and respond to particular stressors, general stress response mechanisms, which are triggered by a broad range of conditions that adversely affect bacterial growth, are among the most widely conserved pathways across the bacterial domain.One such highly conserved bacterial general stress response pathway, the stringent response, controls how bacteria respond to a variety of starvation stresses, and it has been studied for nearly 50 years (reviewed in references 6 to 8). When bact...