2020
DOI: 10.1093/database/baaa114
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CorkOakDB—The Cork Oak Genome Database Portal

Abstract: Quercus suber (cork oak) is an evergreen tree native to the Mediterranean basin, which plays a key role in the ecology and economy of this area. Over the last decades, this species has gone through an observable decline, mostly due to environmental factors. Deciphering the mechanisms of cork oak’s response to the environment and getting a deep insight into its biology are crucial to counteract biotic and abiotic stresses compromising the stability of a unique ecosystem. In the light of these setbacks, the publ… Show more

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Cited by 11 publications
(6 citation statements)
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“…For instance, pathways 5 -Learning and training by using RI facilities and services, 9 -Provision of specifically curated/edited data, and 11 -Creating and shaping scientific networks and communities could be applied in the monitoring the impact of BioData.pt training activities (e.g., "Ready for BioData Management? "), the CorkOak DB portal 13 and the consolidation of our Communities and Platforms, in a multidisciplinary network to identify gaps in computing data management and bioinformatics for the life sciences and build solutions. In these cases, around 50% alignment with the primary indicators of each referred pathway was observed, while only 25% alignment was detected when all BioData.pt project indicators were compared with the overall indicators list.…”
Section: Discussionmentioning
confidence: 99%
“…For instance, pathways 5 -Learning and training by using RI facilities and services, 9 -Provision of specifically curated/edited data, and 11 -Creating and shaping scientific networks and communities could be applied in the monitoring the impact of BioData.pt training activities (e.g., "Ready for BioData Management? "), the CorkOak DB portal 13 and the consolidation of our Communities and Platforms, in a multidisciplinary network to identify gaps in computing data management and bioinformatics for the life sciences and build solutions. In these cases, around 50% alignment with the primary indicators of each referred pathway was observed, while only 25% alignment was detected when all BioData.pt project indicators were compared with the overall indicators list.…”
Section: Discussionmentioning
confidence: 99%
“…RI-PATHS also proposes a set of pathways tailored to assess the socio-economic impact of specific project activities, encompassing smaller subgroups of indicators. For instance, pathways 5 - Learning and training by using RI facilities and services , 9 - Provision of specifically curated/edited data , and 11 - Creating and shaping scientific networks and communities seem better suited to evaluate the impact of BioData.pt training activities (e.g., “ Ready for BioData Management ?”), the CorkOak DB portal, 13 and the “building and consolidation of our Communities and Platforms, in a multidisciplinary network to identify gaps in computing data management and bioinformatics for the life sciences and build solutions”.…”
Section: Discussionmentioning
confidence: 99%
“…The missing indicator, Number of publicly available data sets used externally, relates to the optimisation of data use and is a relevant indicator for a RI like BioData.pt. Although BioData.pt has publicly available datasets (e.g., Pheno and CorkOakDB 13 ), it does not currently maintain indicators to demonstrate how these are being used externally. This difficulty also intricates with the fact that there is still a long way to go in the formal acknowledgement of RI services by its users, which is harder when the goods provided are intangible and sometimes provided by third parties.…”
Section: Discussionmentioning
confidence: 99%
“…F. sylvatica, F. crenata, Castanea henryi (Skan) Rehder & E.H. Wilson, and C. crenata. Q. suber transcriptome data were retrieved from the Cork Oak DB (Arias-Baldrich et al, 2020). The accession numbers from SRA raw-sequencing data used can be found in Table S2.…”
Section: Accessing Genomes and Transcriptomesmentioning
confidence: 99%