Correction to: FungalTraits: a user friendly traits database of fungi and fungus-like stramenopiles

Põlme, Sergei; Abarenkov, Kessy; Nilsson, R. Henrik; Lindahl, Björn D.; Clemmensen, Karina E.; Kauserud, Håvard; Nguyen, Nhu; Kjøller, Rasmus; Bates, Scott T.; Baldrián, Petr; Frøslev, Tobias Guldberg; Adojaan, Kristjan; Vizzini, Alfredo; Suija, Ave; Pfister, Donald H.; Baral, Hans Otto; Järv, Helle; Madrid, Hugo; Nordén, Jenni; Liu, Jian‐Kui; Pawłowska, Julia; Põldmaa, Kadri; Pärtel, Kadri; Runnel, Kadri; Hansen, Karen; Larsson, Karl ­Henrik; Hyde, Kevin D.; Sandoval-Denis, Marcelo; Smith, Matthew; Toome‐Heller, Merje; Wijayawardene, Nalin N.; Menolli, Nelson; Reynolds, Nicole; Drenkhan, Rein; Maharachchikumbura, Sajeewa S. N.; Gibertoni, Tatiana Baptista; Læssøe, Thomas; Davis, William J.; Tokarev, Yuri S.; Corrales, Adriana; Soares, Adriene Mayra; Agan, Ahto; Machado, Alexandre Reis; Argüelles-Moyao, Andrés; Detheridge, Andrew; Meiras-Ottoni, Angelina de; Verbeken, Annemieke; Dutta, Arun Kumar; Cui, Bao‐Kai; Pradeep, C. K.; Marín, César; Stanton, Daniel E.; Gohar, Daniyal; Wanasinghe, Dhanushka N.; Otsing, Eveli; Aslani, Farzad; Griffith, Gareth; Lumbsch, Thorsten; Grossart, Hans Peter; Masigol, Hossein; Timling, Ina; Hiiesalu, Inga; Oja, Jane; Kupagme, John Y.; Geml, József; Álvarez-Manjarrez, Julieta; Ilves, Kai; Loit, Kaire; Adamson, Kalev; Nara, Kazuhide; Küngas, Kati; Rojas-Jiménez, Keilor; Bitenieks, Krišs; Irinyi, László; Nagy, László G.; Soonvald, Liina; Zhou, Li; Wagner, Lysett; Aime, M. Catherine; Öpik, Maarja; Mujica, María Isabel; Metsoja, Martin; Ryberg, Martin; Vasar, Martti; Murata, Masaya; Nelsen, Matthew P.; Cleary, Michelle; Samarakoon, Milan C.; Doilom, Mingkwan; Bahram, Mohammad; Hagh‐Doust, Niloufar; Dulya, Olesya V.; Johnston, Peter R.; Kohout, Petr; Chen, Qian; Tian, Qing; Nandi, Rajasree; Amiri, Rasekh; Perera, Rekhani H.; Chikowski, Renata dos Santos; Alvarenga, Renato Lúcio Mendes; Garibay‐Orijel, Roberto; Gielen, Robin; Phookamsak, Rungtiwa; Jayawardena, Ruvishika S.; Rahimlou, Saleh; Karunarathna, Samantha C.; Tibpromma, Saowaluck; Brown, Shawn P.; Sepp, Siim; Mundra, Sunil; Luo, Zhu Hua; Bose, T. K.; Vahter, Tanel; Netherway, Tarquin; Teng, Yang; May, Tom W.; Varga, Torda; Li, Wei; Coimbra, Victor Rafael Matos; Oliveira, Virton Rodrigo Targino de; Lima, Vítor Xavier de; Mikryukov, Vladimir; Lu, Yong‐Zhong; Matsuda, Yosuke; Miyamoto, Yumiko; Kõljalg, Urmas; Tedersoo, Leho

doi:10.1007/s13225-021-00470-0

Cited by 18 publications

(8 citation statements)

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“…Tukey’s HSD test was used if differences between groups were significant. Bacterial and fungal functions were delineated separately using FAPROTAX and FungalTraits ( Louca et al, 2016 ; Põlme et al, 2020 ). Symbiotic patterns of bacterial and fungal communities were assessed through network analyses using maximum information coefficient (MIC) scores from the MINE statistic ( Shannon et al, 2003 ).…”

Section: Methodsmentioning

confidence: 99%

Effects of frequency and amount of stover mulching on the microbial community composition and structure in the endosphere and rhizosphere

Li,

Zou,

Song

et al. 2024

Front. Microbiol.

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Stover mulching, as a sustainable agricultural conservation practice, has been shown to effectively increase soil organic matter and enhance crop yields. The impact of stover mulching on soil microorganisms has been extensively studied. However, less attention has been given to endophytic and rhizospheric microorganisms that have closer relationships with crops. How do the quality and frequency of stover mulching affect the composition and structure of these endosphere and rhizosphere microbial communities? And what is their influence on critical indicators of soil health such as bacterial plant pathogen and Rhizobiales? These questions remain unresolved. Therefore, we investigated the responses of the microbial functional guilds in the endosphere and rhizosphere to maize stover mulching qualities (0%, 33%, 67%, and total stover mulching every year) and frequencies (once every 3 years and twice every 3 years) under 10-year no-till management. Results showed significant correlations between Bacillales and Rhizobiales orders and soil SOC, NO3−N, and NH4+N; Hypocreales and Eurotiales orders were significantly correlated with soil NO3−N, with the Aspergillus genus also showing a significant correlation with soil SOC. The frequency and quality of stover mulching had a significant effect on root and rhizospheric microbial communities, with the lowest relative abundance of bacterial plant pathogens and highest relative abundance of nitrogen-fixing bacteria such as Rhizobiales and Hypocreales observed under F1/3 and F2/3 conditions. The most complex structures in endosphere and rhizospheric microbial communities were found under Q33 and Q67 conditions, respectively. This research indicates that from a soil health perspective, low-frequency high-coverage stover mulching is beneficial for the composition of endosphere and rhizosphere microbial communities, while moderate coverage levels are conducive to more complex structures within these communities. This study holds significant ecological implications for agricultural production and crop protection.

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Section: Methodsmentioning

confidence: 99%

Effects of frequency and amount of stover mulching on the microbial community composition and structure in the endosphere and rhizosphere

Li,

Zou,

Song

et al. 2024

Front. Microbiol.

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“…Silva and Unite databases were used to obtain the species classification data corresponding to each OTU. The Ectomycorrhizal fungi were divided using FungalTraits ( Põlme et al, 2020 ).…”

Section: Methodsmentioning

confidence: 99%

Plant–microorganism–soil interaction under long-term low-dose ionizing radiation

Zeng,

Wen,

Luo

et al. 2024

Front. Microbiol.

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As the environmental nuclear radiation pollution caused by nuclear-contaminated water discharge and other factors intensifies, more plant–microorganism–soil systems will be under long-term low-dose ionizing radiation (LLR). However, the regulatory mechanisms of the plant–microorganism–soil system under LLR are still unclear. In this study, we study a system that has been stably exposed to low-dose ionizing radiation for 10 years and investigate the response of the plant–microorganism–soil system to LLR based on the decay of the absorbed dose rate with distance. The results show that LLR affects the carbon and nitrogen migration process between plant–microorganism–soil through the “symbiotic microbial effect.” The increase in the intensity of ionizing radiation led to a significant increase in the relative abundance of symbiotic fungi, such as Ectomycorrhizal fungi and Rhizobiales, which is accompanied by a significant increase in soil lignin peroxidase (LiP) activity, the C/N ratio, and C%. Meanwhile, enhanced radiation intensity causes adaptive changes in the plant functional traits. This study demonstrates that the “symbiotic microbial effect” of plant–microorganism–soil systems is an important process in terrestrial ecosystems in response to LLR.

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“…We used the microeco package to determine the ecological guilds of the microbial community according to the FAPROTAX v1.2.4 and tax4Fun2 databases for bacteria (Louca et al, 2016; Wemheuer et al, 2020) and FungalTraits for fungi (Põlme et al, 2021). Differential abundance tests for ecological function were then conducted based on the LEfSE (Linear discriminant analysis Effect Size) method (Liu et al, 2021).…”

Section: Methodsmentioning

confidence: 99%

Dredged sediments contain potentially beneficial microorganisms for agriculture and little harmful cyanobacteria

Rúa

Julian

Stevenson

2023

J of Sust Agri & Env

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Introduction Soils worldwide are degrading, raising concerns about our ability to feed the growing global population. Soil amendments that can alleviate degradation are gaining attention. The application of sediments dredged from waterways to agricultural fields has increasing promise as a means for improving degraded soils. However, herbaceous plant species may have difficulty establishing on dredged material because of low nutrient availability, inhibitory levels of toxins, unsuitable moisture conditions and lack of microorganisms capable of ameliorating these characteristics. To counteract these issues, we sought to understand if the use of a cover crop would increase the abundance, diversity and function of beneficial soil microorganisms compared to harmful microorganisms in dredged sediments. Materials and Methods We collected soil samples from two 100% dredged sediment plots, one where winter cereal rye (Secale cereal) was grown as a winter cover crop and one left fallow over the winter, followed by traditional corn (Zea mays) planting. We sampled both plots three times during the growing season: before cover crop application, following cover crop application but before corn planting and following final corn harvest. We then used high‐throughput sequencing to identify the bacterial and fungal communities present in the samples. Results Our data show that cover crop application did not alter the microbial community in these plots. However, sampling time decreased species diversity and altered the composition of both fungal and bacterial communities recovered from these plots. Across both plots, microorganisms associated with carbon cycling were more abundant than those associated with harmful effects, including microcystin‐producing cyanobacteria, which were an extremely small portion of the overall community. Conclusion Our work suggests that dredged sediments have the potential to improve soil function through the addition of microorganisms associated with nutrient cycling, but a cover crop is not necessary to incur these benefits.

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Correction to: FungalTraits: a user friendly traits database of fungi and fungus-like stramenopiles

Cited by 18 publications

References 0 publications

Effects of frequency and amount of stover mulching on the microbial community composition and structure in the endosphere and rhizosphere

Effects of frequency and amount of stover mulching on the microbial community composition and structure in the endosphere and rhizosphere

Plant–microorganism–soil interaction under long-term low-dose ionizing radiation

Dredged sediments contain potentially beneficial microorganisms for agriculture and little harmful cyanobacteria

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