Geochemical analysis of sedimentary organic matter in recent lacustrine sediments appears to be a useful tool in providing information concerning past environmental conditions. However, such analysis is often made without knowing the geochemical characteristics of the organic matter derived from the watershed and, more explicitly, its soils. The present work deals with (i) a geochemical investigation (Rock-Eval pyrolysis) of soil organic matter sampled in a lake watershed, and (ii) the study of the sedimentary organic matter trapped in the lake deposits. The research was conducted on Chaillexon Lake which was created by a rock collapse that dammed the palaeovalley of the Doubs River about 12 000 years ago. Since this event, the sediment trap provides a continuous palaeoclimatic record for the Postglacial period.Results obtained lead to two main conclusions. First, the variability of Rock-Eval pyrolysis values observed in soils modifies the common interpretation given to these parameters in the characterization of sedimentary organic matter. Indeed, variations in these parameters point not only to varying proportions of terrestrial and lacustrine organic matter in a lacustrine infilling but also to variations of the terrestrial supply linked with the evolution of vegetal cover in the catchment. The second conclusion is that the story of the Chaillexon lacustrine system is marked by a rather sudden soil and forest development at the Preboreal-Boreal transition (9000 BP).