2017
DOI: 10.1021/acs.est.5b01409
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Correlative Cryogenic Spectromicroscopy to Investigate Selenium Bioreduction Products

Abstract: Accurate mapping of the composition and structure of minerals and associated biological materials is critical in geomicrobiology and environmental research. Here, we have developed an apparatus that allows the correlation of cryogenic transmission electron microscopy (cryo-TEM) and synchrotron hard X-ray microprobe (SHXM) data sets to precisely determine the distribution, valence state, and structure of selenium in biofilms sampled from a contaminated aquifer near Rifle, CO. Results were replicated in the labo… Show more

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Cited by 25 publications
(24 citation statements)
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“…All spectra recorded in the range 12500–13070eV, were deadtime-corrected, deglitched, calibrated, pre-edge background substracted, and post-edge normalized using a suite of custom LabVIEW software available at the beamline. Least-squares linear combination fitting (LCF) of experimental XANES spectra was performed in the range of 12630 to 12850 eV using a library of 52 standard selenocompounds (Fakra et al, 2018 ). The best LCF was obtained by minimizing the normalized sum of squares residuals (NSS = 0 = perfect fit).…”
Section: Methodsmentioning
confidence: 99%
See 1 more Smart Citation
“…All spectra recorded in the range 12500–13070eV, were deadtime-corrected, deglitched, calibrated, pre-edge background substracted, and post-edge normalized using a suite of custom LabVIEW software available at the beamline. Least-squares linear combination fitting (LCF) of experimental XANES spectra was performed in the range of 12630 to 12850 eV using a library of 52 standard selenocompounds (Fakra et al, 2018 ). The best LCF was obtained by minimizing the normalized sum of squares residuals (NSS = 0 = perfect fit).…”
Section: Methodsmentioning
confidence: 99%
“…The error margin for the fraction found for selenocompounds is ±10%. Additionally, valence-state scatter plots, where each datapoint represent a XANES spectrum, were obtained for quick visualization of Se valence state in the samples, following procedures detailed in Fakra et al ( 2018 ).…”
Section: Methodsmentioning
confidence: 99%
“…Because it has low solubility, biogenic Se(0) production is often considered a beneficial bioremediation strategy for limiting Se mobility in the environment and reducing its ability to enter the food chain. However, biogenic Se(0) tends to be nanoparticulate, with most organisms forming amorphous spherical particles with 100-300 nm diameters (Fakra et al, 2015;Oremland et al, 2004).…”
Section: Se(iv) Mediamentioning
confidence: 99%
“…Least square linear combination (LSQ) fitting of Se XANES spectra was performed in the 12630–12850 eV range, using a library of standard seleno-compounds. As Se standards a library of 52 compounds was used ( Fakra et al, 2018 ). All data processing and analyses were performed with a suite of custom LabVIEW (National Instruments, Austin, TX, United States) programs available at the beamline.…”
Section: Methodsmentioning
confidence: 99%