2022
DOI: 10.1016/j.csbj.2022.04.039
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Corrigendum to “Structure–function relationship between soluble epoxide hydrolases structure and their tunnel network” [Comput. Struct. Biotechnol. J. 20 (2022) 193–205]

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“…Urea analogs 15 were found to interact with the catalytic triad of sEH through urea | 3 of 31 oxygen that serves as a hydrogen bond acceptor from Tyr383, Tyr446 residues, whereas the NH group serves as hydrogen bond donor for Asp335 (Figure 6). [18,19] The bulky substituents such as -OCF 3 in the test compound 15 were accommodated in the hydrophobic cavity of sEH, which is lined by Leu417, Met419, Phe429, Phe387, and Val418 residues, which further provided binding affinity in the short branch of sEH active site. The molecular dynamic simulation analysis showed the importance of the flexibility of the benzyl ring that shows π-π stacking interactions with the phenyl ring of Tyr466, whereas the benzoxazolone ring shows similar interactions with the Trp336 which facilitates its accommodation near the bottleneck of the active site in the long branch.…”
Section: Maz Et Al Developed Urea and Amide Conjugates Of Benzox-mentioning
confidence: 99%
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“…Urea analogs 15 were found to interact with the catalytic triad of sEH through urea | 3 of 31 oxygen that serves as a hydrogen bond acceptor from Tyr383, Tyr446 residues, whereas the NH group serves as hydrogen bond donor for Asp335 (Figure 6). [18,19] The bulky substituents such as -OCF 3 in the test compound 15 were accommodated in the hydrophobic cavity of sEH, which is lined by Leu417, Met419, Phe429, Phe387, and Val418 residues, which further provided binding affinity in the short branch of sEH active site. The molecular dynamic simulation analysis showed the importance of the flexibility of the benzyl ring that shows π-π stacking interactions with the phenyl ring of Tyr466, whereas the benzoxazolone ring shows similar interactions with the Trp336 which facilitates its accommodation near the bottleneck of the active site in the long branch.…”
Section: Maz Et Al Developed Urea and Amide Conjugates Of Benzox-mentioning
confidence: 99%
“…[36,37] F I G U R E 6 A typical catalytic triad of soluble epoxide hydrolase (sHE) constituted of Tyr446, Tyr383, and Asp335 residues, and interacting with an inhibitor ligand. [18,19] Bach et al reported the synthesis, and SAR analysis for appraising the ACs inhibition profile of benzoxazolone carboxamides.…”
Section: Acid Ceramidase (Ac) Inhibitorsmentioning
confidence: 99%
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