“…These analyses that approximately 1/3 of the genes depleted from ribosomes were also enriched in TDP-43 complexes (Figure 3a, Supplemental Table 3-1, TDP-43 WT 30.6%, TDP-43 G298S 37.6%) suggesting that these may be direct targets of translation inhibition. GO term analyses of these TDP-43 enriched, TRAP depleted genes using David 6.8 49,50 identified pathways that have previously been associated with ALS including GPCR signaling 65,66 , NMJ Development 65,66 , Autophagy 67,68 , ER Organization 69 , Immune Respone 70 and Oxidation Reduction 71 Table 3-4) comprising genes related to membrane excitability, a process known to be altered in ALS 72 . We note that although GO term analysis is useful to identify translational alterations affecting multiple components of the same pathway, the genes encompassed by these GO terms represent only a fraction of genes enriched and translationally dysregulated in the context of TDP-43 ( Figure 3a, f, TDP-43 WT = 13.7%, TDP-43 G298S = 12.4%).…”