Small-angle X-ray scattering (SAXS) measurements reveal a striking difference in intermolecular interactions between two short highly charged peptides-deca-arginine (R10) and deca-lysine (K10). Comparison of SAXS curves at high and low salt concentration shows that R10 self-associates, while interactions between K10 chains are purely repulsive. The self-association of R10 is stronger at lower ionic strengths, indicating that the attraction between R10 molecules has an important electrostatic component. SAXS data are complemented by NMR measurements and potentials of mean force between the peptides, calculated by means of umbrella-sampling molecular dynamics (MD) simulations. All-atom MD simulations elucidate the origin of the R10-R10 attraction by providing structural information on the dimeric state. The last two C-terminal residues of R10 constitute an adhesive patch formed by stacking of the side chains of two arginine residues and by salt bridges formed between the like-charge ion pair and the C-terminal carboxyl groups. A statistical analysis of the Protein Data Bank reveals that this mode of interaction is a common feature in proteins.cell-penetrating peptide | self-association | MD simulations | SAXS | NMR R ecent studies focusing on interactions of charged proteins in electrolyte solutions have highlighted the interplay of two counteracting electrostatic forces (1-4). The first one originates from the presence of a localized distribution of charges defining an electrostatic patch on the protein surface. Depending on relative orientations, the charge distributions in the patches on the protein molecules can become complementary, thereby leading to an attractive electrostatic force (5). This anisotropic force is short ranged and is hereafter referred to as the electrostatic adhesive force. The other force is the double-layer force arising from the Coulombic repulsion between like-charged molecules in the electrolyte medium. Both electrostatic adhesive and double-layer forces are weakened by the presence of salt in the solution. As a nontrivial consequence, the propensity of the proteins to aggregate is heightened at low-to-intermediate ionic strengths (1)(2)(3)6). This is because of lowering of Coulombic repulsion due to salt screening of the net charge of the protein, in conjunction with the presence of the adhesive force, which operates at shorter distances and is therefore less efficiently screened.In this work, the competition between electrostatic adhesive and double-layer forces, together with a chemically specific like-charge attraction between guanidinium (Gdm + ) side-chain groups, is reported for solutions of a small highly charged peptide. Observation of the complex aggregation behavior for a relatively simple molecule is substantiated by a comparative investigation of deca-arginine (R10) and deca-lysine (K10), in high and low ionic strength solutions, conducted using small-angle X-ray scattering (SAXS) measurements, all-atom molecular dynamics (MD) simulations, and 1 H-13 C heteronuclear single...