Dimethylglycine dehydrogenase (Me2GlyDH), an enzyme of choline catabolism specifically expressed in the mammalian liver, was analyzed in rat hepatocytes in culture. This mitochondrial enzyme carries the FAD cofactor covalently attached to the polypeptide chain by its riboflavin 8a position to N" of histidine [Cook, R., Misono, Biol. Chem. 256,4102-41081, and a 43-amino-acid leader peptide. The Nterminus of Me,GlyDH contains a conserved amino acid sequence which forms the dinucleotide-binding site in many enzymes with noncovalently bound FAD. Close to the modified histidine there is an amino acid sequence resembling a sequence conserved in thymidylate synthases and shown in these enzymes to be involved in the binding of the pteroyl polyglutamate cofactor.Choline, taken up with the food or set free from phosphatidylcholine, is degraded in mammals, specifically in the liver. The enzymes of this pathway are mitochondrially located. The first, choline dehydrogenase, situated on the matrix side of the inner mitochondrial membrane, contains FAD and has a function similar to the succinate dehydrogenase complex in relation to the respiratory chain [l]. Two additional flavoenzymes of the pathway, dimethylglycine dehydrogenase (Me,GlyDH) and sarcosine dehydrogenase, were shown to contain, besides tightly bound pteroyl pentaglutamate, FAD covalently attached to the polypeptide chain by its riboflavin 8a position to N" of histidine [2].We have investigated the biogenesis of this covalent modification in 6-hydroxy-~-nicotine oxidase, an enzyme of procaryotic origin. With this particular enzyme the histidyl His(FAD) linkage is synthesized in an autocatalytic process by the polypeptide itself. It is not known how this protein modification is accomplished in enzymes of the eucaryotic Correspondence to R. Brandsch, Biochemisches Institut, Universitat Freiburg, Hermann-Herder-Str. 7, W-7800 Freiburg, Federal Republic of Germany Abbreviations. His(FAD), FAD linked through riboflavin position 8r to N" of histidine; MeZGlyDH, dimethylglycine dehydrogenase.Enzyme. Dimethylglycine dehydrogenase (EC 1.5.99.2). Nore. The nucleotide sequence corresponding to the coding part of the sequence reported in this paper is available from the EMBL data bank with accession number X55995.cell. In the case of other cofactors, covalent attachment to the protein, like biotin in carboxylases or heme in cytochrome c, requires a special enzyme [3, 41. The attachment of the prosthetic group is a step involved in the import of apocytochrome c into the intermembrane space and in its correct location within the inner mitochondrial membrane [S]. Whether a similar mitochondrial factor is involved in the covalent attachment of FAD to flavoenzymes is not known. It would also be of interest to know at which stage in the pathway from the precursor protein to the mature form the covalent modification takes place and how it influences the folding of the polypeptide chain on its way to the mature, enzymatically active form.In order to address these questions, we have...