count: 173 words 17 Text count: 6275 words 18 19 20 #Address correspondence to Stacy M. Horner, stacy.horner@duke.edu 21 49 such as such influenza A virus, this innate immune signaling pathway may also be 50 important in controlling other RNA virus infections. 51 52 53 and mitochondria and mitochondrial-ER contact sites (often referred to as mitochondrial-77 associated ER membranes (MAM)) for immune evasion (10-14). 78 Antiviral innate immune signaling against HCV can be initiated by the RNA sensor 79 proteins RIG-I and MDA5 (15-17). RIG-I is directly activated by multiple ubiquitination 80 events by E3 ubiquitin ligases, namely TRIM25 and Riplet, which binds to and adds K63-81 linked ubiquitin chains to RIG-I, but not MDA5 (18-21). Once activated, RIG-I and MDA5 82 signal to the adaptor protein MAVS to drive a signal transduction cascade that induces 83 the phosphorylation of IRF3 and then the transcriptional induction of interferon (IFN)-β. 84 HCV infected can also be sensed by TLR3, which signals via TRIF and IRF3 to induce 85 antiviral innate immunity (22). During HCV infection, NS3-NS4A cleaves and/or 86 inactivates MAVS (10, 12, 23, 24), TRIF (25) and Riplet (19) to block IRF3 activation (26). 87 Here, we aimed to uncouple the roles of NS3-NS4A in replication and immune 88 evasion. We focused on the NS4A transmembrane domain and found a residue, Y16, 89 that regulates differential inactivation of MAVS and Riplet, revealing a new branch of 90 innate immune signaling that controls HCV infection. 91 92
Results
93A Y16F substitution in NS4A disrupts replication of an HCV subgenomic replicon 94 in Huh7 cells, but not in Huh-7.5 cells. 95 The transmembrane domain of NS4A contains two aromatic amino acids: a 96 tryptophan at position 3 (W3) and a tyrosine at position 16 (Y16) (Fig. 1A). These two 97 aromatic amino acids, which are conserved in all sequenced HCV strains in the Los 98 Alamos HCV sequence database ((42) and Fig. 1A), are located at each end of the NS4A