We compare several topologies on the Morse boundary ∂M Y of a CAT(0) cube complex Y . In particular, we show that the two topologies introduced by Cashen and Mackay are not equal in general and provide a new description of one of them in the language of cube complexes. As a corollary, we obtain a new approach to tackle the question whether the visual topology induces a quasi-isometry-invariant topology on the Morse boundary. This leads to an obstruction to quasi-isometryinvariance in terms of the behaviour of geodesics under quasi-isometries. Contents 1. Introduction 1 2. Preliminaries 4 2.1. The Morse boundary 4 2.2. CAT(0) cube complexes 9 2.3. Right-angled Artin groups 12 3. Comparing FG and FQ 13 4. Defining a metric on the Morse boundary of Right-angled Artin groups 21 5. HYP and the visual topology 24 References 26