The present studies characterize at the clonal level the repertoire of lipopolysaccharide-responsive murine B lymphocytes committed to the production of antibodies reactive with denatured DNA. This repertoire is vast in normal mice as 1-5% of total mitogen-induced antibody-forming cell clones secreted denatured DNA-reactive antibodies when the splenocyte donors were CBA (Ighi), BALB/c (Igha), C57BL/6 (Ighb), CBA nu/nu, and C57BL/6 nulnu athymic mice. The autoimmune NZB (Ighe) strain did not display elevated proportions of anti-denatured DNA antibody-forming cell precursors. Crossreactions shown by CBA anti-denatured DNA antibodies suggest that many antibodies might derive significant binding energy from interaction with the bases or similar hydrophobic moieties. Cross-reactions with other tested polynucleotides were frequent, but cross-reactions with phospholipids and phosphocholine were undetectable. Most anti-DNA antibodies bound preferentially or exclusively to single-stranded denatured DNA as compared to double-stranded native DNA. The frequency of anti-denatured DNA antibody-forming cell precursors among CBA peritoneal cells was not elevated. Fluorescence-activated cell sorter-selected Ly-1-positive NZB splenic B cells were not enriched, and Ly-1 negative B cells were not depleted of anti-DNA antibody-forming cell precursors. These results show that antibody-forming cell precursors specific for denatured DNA are not restricted to the Ly-1 positive B-cell subset.Elevated serum levels of anti-DNA antibodies are characteristic of human systemic lupus erythematosus and of autoimmune syndromes of certain inbred mouse strains, e.g., (NZB x NZW)F1, MRL-lpr/lpr, and BXSB (1, 2). The generation of monoclonal antibodies (mAbs) by hybridoma technology from B cells of such humans and mice has allowed detailed characterization of the anti-DNA antibodies. A remarkable range of cross-reactions with, for example, multiple polynucleotides, cardiolipin and other phospholipids, proteoglycans, haptens, and some intracellular proteins has been displayed (3-5). To understand whether a selective process is operative, it is necessary to compare the cross-reactivity patterns of monoclonal anti-DNA antibodies from normal and "autoimmune" donors. Other studies of the normal B-cell repertoire of mice (6-9) show a surprisingly high incidence of cells producing antibodies that can bind to self-antigens including DNA.Experiments of Hayakawa et al. (10) suggest that the subset of Ly-1-positive (Ly-1) B cells are of special importance in autoantibody production, including anti-DNA and anti-erythrocyte autoantibodies. The present experiments use in vitro clonal analysis for the identification of potentially anti-DNA antibody-forming cells (AFC) from normal, autoimmune, and congenitally athymic mouse strains and among cell populations enriched for Ly-1+ B cells.