Electron micrographs and x-ray diffraction patterns of crystals of ribu-lose bisphosphate carboxylase, probably the most abundant protein on earth, have provided new details of the arrangement of subunits. The eight large subunits and eight small subunits are clustered in two layers, perpendicular to a fourfold axis of symmetry. Viewed down thefowfold axis, the molecule is square-shaped.Electron micrographs and x-ray diffraction from a new crystal form of oribulose-1 ,5-bisphosphate carboxylase (RuBPCase) show much about the arrangement of subunits in the molecule. RuBPCase initiates the Calvin cycle of photosynthesis and is probably the most abundant protein on earth (1). In green plants, the enzyme is found inside the chloroplast, sometimes in crystalline form (1, 2). The enzyme can also be crystallized in vitro (3). Our study of crystal form I of the in vitro crystals yielded a preliminary picture of the subunit organization of the molecule. The 560,000-dalton enzyme contains eight large (L) (about 55,000 daltons) and eight small (S) (about 15,000 daltons) subunits, and displays one cylindrical hole of about 20 A in diameter that runs through the molecule. The subunits are arranged with a minimum D 2 (222) symmetry; that is, the polypeptide chains are packed around three mutually perpendicular twofold rotation axes. Electron micrographs of a new crystal form, II, show images of the molecules in which some substructure is visible. X-ray diffraction and related measurements on form II show that the eight LS subunit pairs are organized in a two-layer molecule with D4 4 (422) symmetry.Crystal form II of RuBPCase from tobacco is grown by the same procedure as form I (4), except that dialysis of the protein solution (5 to 10 mg/ml) is carried out in 0.05M potassium phosphate buffer at pH 6.0. Two crystal morphologies are obtained: large (0.2 to 0.7 mm), birefringent triangular prisms suitable for x-ray diffraction experiments, and thin (~ 0.1 μm) square platelets suitable for electron microscopy.X-ray precession photographs of the hkO (Fig. 1, A and B) and hOI (not shown) zones of form II reveal that the crystal system is tetragonal with unit cell dimensions a = b = 230 ± 2 Å, and c = 315 ± 3 Å. Optical diffraction patterns (Fig. 1, C and D) from electron micrographs also reveal two perpendicular cell edges of 230 Å. Both x-ray and optical diffraction patterns show that the structure at very low resolution (~ 80 Å) has unit cell dimensions a = b = 162 Å. At higher resolution (15 to 80 Å; Fig. 1
NIH-PA Author ManuscriptNIH-PA Author Manuscript NIH-PA Author Manuscript determined from the reciprocal lattice symmetry (4/mmm) and systematically absent reflections.In determining the arrangement of molecules within this unit cell we were aided by the micrograph of a negatively stained platelet that is reproduced in Fig. 2. This micrograph is also the first one that we obtained in which some molecular substructure of RuBPCase is visible (see below). The view is down the c-axis, and the dominant feature is an arra...