Introductionleast two of the features are to be present which is relieved by defecation, onset is associated with a change in frequency and form of stool. The symptom must persist at least 12 weeks, in the preceding one year. 2 According to literature, IBS is multifactorial in origin. Several environmental factors, psycho social stressors, altered gut flora contribute to pathophysiology of IBS. It is now largely considered as a disorder of the brain-gut axis, involving abnormal function in the enteric, autonomic and central nervous system. 4 Autonomic nervous system regulates the visceral sensitivity of the body and coordinates gastrointestinal motility and secretion. Background: Autonomic nerve function impairment is related to development of Irritable Bowel Syndrome (IBS). Heart rate variability (HRV) is a useful tool to measure autonomic nerve function activity and also sympatho-vagal balance. Objective: To assess autonomic nerve function activity by heart rate variability analysis in patients with Irritable Bowel Syndrome. Methods: This cross sectional study was conducted in the Department of Physiology, Bangabandhu Sheikh Mujib Medical University (BSMMU), Dhaka from 1 st July 2010 to 30 th June 2011. Ninety patients aged 20-50 years of both sexes with Irritable bowel syndrome were included in the study group. They were enrolled from the OPD of Gastroenterology in BSMMU. For comparison age and sex matched 30 apparently healthy subjects were also studied as control. The power spectral HRV parameters were recorded by a digital Polyrite. For statistical analysis ANOVA, independent sample t-test were performed. Results: Mean resting pulse rate, mean HR, SBP, DBP, LF, LF norm and LF/HF were significantly higher(P<0.001) and total power, HF, HF norm were significantly lower(P<0.001) in IBS group compared to those of control. Conclusion: This study concludes markedly lower parasympathetic with concomitant higher sympathetic activity and shifting of sympathovagal balance towards sympathetic predominance in patients of IBS.