A synthetic gene coding for a chicken egg white cystatin variant was cloned and expressed using the pIN‐III‐ompA Escherichia coli expression system. After osmotic shock of the E. coli cells, the cysteine proteinase inhibitor was isolated from periplasm and purified by S‐carboxymethylpapain affinity chromatography. The resulting inhibitory material was characterized by SDS/PAGE, reversed‐phase HPLC, peptide mapping and amino acid sequencing. The recombinant variant chicken AEF‐[S1 → M, M29 → I, M89 → L]cystatin shows strong inhibitory activity and displays Ki values in the complex with papain, actinidin and cathepsin B similar to those found for natural chicken cystatin. The purified variant showed a native‐chicken‐cystatin‐like conformational state, as determined by NMR spectroscopy, if the NMR data of 15N‐labelled recombinant inhibitor were compared with those of the natural inhibitor.