Although papillary carcinoma accounts for approximately 70% of all thyroid cancers, preliminary studies of allelic loss have thus far not identified any areas of chomosomal deletion. We evaluated 30 papillary thyroid carcinomas for chromosomal loss/allelic imbalance by testing at least 2 microsatellite markers from every autosomal arm. Fifteen of the 30 tumors tested exhibited loss of heterozygosity/allelic imbalance (LOH/AI) at one or more loci. Chromosomal arms with frequent LOH/AI included 4q, Sp, 7p and I I p. An average of I. I chromosomal arms displayed LOH/AI in each individual tumor. Therefore, 4q, 5p, 7p and, to a lesser extent, I I p display significant LOH/AI in papillary thyroid cancer, which indicates the presence of putative tumor-suppressor gene loci at these chromosomal arms.o I996 Witey-Liss, Inc.Papillary thyroid carcinoma (PTC) accounts for approximately 70% of all thyroid cancers (Goepfert and Callender, 1994). This neoplasm exhibits a wide variation in clinical behavior and may result in substantial morbidity and mortality (Robbins et al., 1991). However, little is known about the molecular genetic events involved in the progression of PTC. , 1994). There have been few comprehensive attempts to define other possible areas of chromosomal loss in PTC that may indicate the inactivation of tumor-suppressor gene loci. Two initial allelotypes of PTC examined showed an insufficient number of chromosomal arms with a low degree of informativity (Matsuo et al., 1991) or no chromosomal arm or locus exhibiting any loss of heterozygosity (LOH) due to small sample size (Kubo et al., 1991). In this study, 30 PTCs were evaluated for microsatellite loss at all autosomal arms, using microsatellite markers with a high degree of informativity to identify novel, frequently occurring areas of chromosomal deletion or imbalance.
MATERIAL AND METHODS
Tissue and DNA extractionThirty fresh frozen tumor samples were harvested from thyroid resection specimens from patients with PTC. All thyroid resections were done at Johns Hopkins Hospital. Representative sections from tissue used for DNA extraction were stained with hematoxylin and eosin, and diagnosis was confirmed for each lesion by a pathologist (W.W.). Fresh frozen tissue was meticulously dissected on a cryostat to ensure that the specimen contained at least 75% neoplastic cells. Approximately 35 (12 km thick) sections were then collected and placed in SDS/proteinase K at 48°C for 24 hr. DNA was isolated by phenol-chloroform extraction and ethanol precipitation as previously described (van der Riet et al., 1994). Normal control DNA was obtained either by (i) venipuncture and isolation of lymphocyte DNA as previously described (van der Riet et al., 1994), (2) collection of skeletal muscle in the previously mentioned fresh frozen resection specimens followed by DNA isolation or, if necessary, (iii) collection of distant (normal) thyroid tissue from the resection and subsequent DNA isolation.
Analysis for allelic losslimbalanceMicrosatellite markers suitable for PC...