There is increasing detection of renal tumours, especially small renal masses largely due to widespread availability of radiological imaging modalities. However, imaging techniques and renal lesion biopsies cannot accurately define malignant from benign renal tumours.Therefore such indeterminate renal tumours undergo surgical resection. Unfortunately a significant proportion of resected renal tumours turn out to be benign on histopathological diagnosis. The impact of this scenario is the morbidities of unnecessary surgery and loss of valuable nephrons with the associated increased risk of chronic kidney disease and cardiovascular complications. Reduction of unnecessary surgeries would also translate into decreased costs, and allow for more efficient utilisation of health budgets.Another diagnostic dilemma faced by pathologists is the occasional difficulty in distinguishing some renal tumour subtypes, due to overlapping morphological and histological features. Differentiating malignant chromophobe renal cell carcinoma (chRCC) from benign renal oncocytoma (RO) is one such dilemma. Their correct diagnosis is crucial as prognosis, management and surveillance protocols differ between the two tumour subtypes. Therefore effective and reproducible immunohistochemistry (IHC) biomarkers need to be identified, together with novel biomarkers, through molecular profiling of these tumour subtypes.In Chapter 1, the relevant background, significance of the research topic, literature review, hypothesis and aims of this PhD research were presented. Contents of this chapter have also been published as a review article. The review article provided the clinical presentation, ii explained the diagnostic dilemma, and described the value of current molecular markers to assist in differentiation between chRCC and RO.The aims of this research project were to: 1) identify a panel of IHC biomarkers which can effectively differentiate chRCC from RO through a comprehensive literature search and meta-analysis approach, as well as using some of the research results from my laboratory; 2) analyse the molecular profiles of renal cancers via IHC and morphometry techniques using Biobank. This work involved a significant amount of time and resources throughout the PhD research project, achieved Aim 4 of the thesis, and will be a legacy of this PhD research.Chapter 3 examined the existing IHC biomarkers that have been reported as useful in differentiating chRCC from RO. A meta-analysis and systematic review was conducted in iii this chapter to assess the most effective IHC biomarkers, and it has been published. In summary, we recommended a selection from a panel of IHC biomarkers, namely, amylase α1A, Wnt-5a, FXYD2, ARPP, CD63, TGFβ1, CK7, S100A1, caveolin-1 and claudin-7 to aid in the differentiation of chRCC and RO.In Chapter 4, we investigated the molecular profiles of nuclear factor-κB (NF-κB) subunits in RCC disease. Our results represent the first and largest study to report on the IHC expression of NF-κB subunits (p65, p50, p52, cRel)...