3-Methyladenine which stops macroautophagy at the sequestration step in mammalian cells also inhibits the phosphoinositide 3-kinase (PI3K) activity raising the possibility that PI3K signaling controls the macroautophagic pathway (Blommaart, E. F. C., Krause, U., Schellens, J. P. M., Vreeling-Sindelá rová , H., and Meijer, A. J. Macroautophagy is a major intralysosomal catabolic process conserved during the evolution of eukaryotic cells (1-4). In mammalian cells, the macroautophagic pathway starts with the sequestration of cytoplasmic material (including mitochondria, peroxisomes, smooth and rough membranes, and cytosolic constituents: proteins, glycogen, neutral lipids, RNA, and ribosomes) to form an early autophagosome. The membrane of early autophagosomes is derived from ribosome-free regions of the rough endoplasmic reticulum (5) and/or a related organelle called the phagophore (see Ref. 6 and references therein). After acidification the early autophagosome is transformed in a late autophagosome. Fusion between late autophagosomes and lysosomes triggers the degradation of sequestered material into autolysosomes. Material from the endocytic pathway can be imported in autophagic vacuoles at different steps of their maturation (7,8).Recently, studies have shed light on the intracellular mechanisms that control membrane flow along the autophagic/lysosomal pathway in mammalian cells (reviewed in Refs. 9 and 10). It has been suggested that the phosphoinositide 3-kinase (PI3K) 1 signaling cascade controls macroautophagy (11) and that 3-MA, an inhibitor of macroautophagic sequestration (12), behaves as a PI3K inhibitor.PI3K belongs to a family of enzymes that phosphorylates the 3Ј-hydroxyl group on the inositol ring of phosphoinositides (reviewed in Refs. 13-16). These phospholipids are involved in a large array of signal transduction pathways controlling mitogenic responses, differentiation, apoptosis, cytoskeletal organization, and membrane flow along the secretory and endocytic pathways (reviewed in Ref. 17). PI3Ks are classified into three classes. Class I enzymes are composed of catalytic p110 subunits and p85 adaptors. The SH2 motif contained in p85 adaptors bind to phosphorylated Tyr residues thereby linking the catalytic subunit to the Tyr kinase signaling pathway (class I A ). A member of the class I PI3K family (class I B , p110␥/p101) is activated by subunits of trimeric G proteins (18,19). Class I PI3Ks phosphorylate PtdIns, PtdIns(4)P, PtdIns(4,5)P 2 but in vivo PtdIns(4,5)P 2 is likely to be the favorite substrate. Class II enzymes are large enzymes (Ͼ200 kDa) characterized by a C-terminal containing a C2 domain (20-23). These enzymes phosphorylate in vitro PtdIns, PtdIns(4)P, but not PtdIns(4,5)P 2 . Class III enzymes 1 The abbreviations used are: PI3K, phosphatidylinositol 3-kinase; diC16PtdIns(3)P, dipalmitoyl phosphatidylinositol 3-phosphate; diC16PtdIns(4)P, dipalmitoyl phosphatidylinositol 4-phosphate; diC16Ptd-Ins(3,4)P 2 , dipalmitoyl phosphatidylinositol 3,4-bisphosphate; diC16Pt-dIns(4,5)P 2 ...