Cytological and Molecular Cytogenetic Insights into the Cynara cardunculus Genome

Giorgi, Debora; Pandozy, G.; Farina, Anna; Grosso, Valentina; Crinò, P.; Lucretti, Sergio

doi:10.1007/978-3-030-20012-1_8

Cited by 1 publication

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References 47 publications

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“…In order to do some basic comparative genomics analyses, we first utilized OrthoFinder2 (v2.5.4) (Emms & Kelly, 2019) to determine the orthologous gene including the single-copy orthologous genes of 15 species, including 11 species in Asterales [Chrysantheum indicum (this study), Chrysanthemum lavandulifolium (Wen et al, 2022), Chrysanthemum nankingense (Song et al, 2018(Song et al, , 2023, Helianthus annuus (Badouin et al, 2017), Lactuca sativa (Reyes-Chin-Wo et al, 2017), Taraxacum mongolicum (Lin et al, 2021), Arctium lappa (Yang et al, 2021), Cynara cardunculus (Giorgi et al, 2019), Scaevola sericea (He et al, 2022), Nymphoides indica (Yang, Qian, et al, 2022), and Platycodon grandifloras (Jia et al, 2022)] and four species outside of Asterales [Ilex asprella (Kong et al, 2022), Coffea canephora (Ogutu et al, 2016), Vitis vinifera (Muñoz et al, 2014), and thaliana (Michael et al, 2018)]. The alignment of coding sequences of single-copy orthologous genes was conducted by MAFFT (v7.490) (Katoh et al, 2017).…”

Section: Phylogenetic Tree Divergence Time and Gene Family Evolution ...mentioning

confidence: 99%

The haplotype‐resolved genome of diploid Chrysanthemum indicum unveils new acacetin synthases genes and their evolutionary history

Hou,

Yang,

et al. 2024

The Plant Journal

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SUMMARYAcacetin, a flavonoid compound, possesses a wide range of pharmacological effects, including antimicrobial, immune regulation, and anticancer effects. Some key steps in its biosynthetic pathway were largely unknown in flowering plants. Here, we present the first haplotype‐resolved genome of Chrysanthemum indicum, whose dried flowers contain abundant flavonoids and have been utilized as traditional Chinese medicine. Various phylogenetic analyses revealed almost equal proportion of three tree topologies among three Chrysanthemum species (C. indicum, C. nankingense, and C. lavandulifolium), indicating that frequent gene flow among Chrysanthemum species or incomplete lineage sorting due to rapid speciation might contribute to conflict topologies. The expanded gene families in C. indicum were associated with oxidative functions. Through comprehensive candidate gene screening, we identified five flavonoid O‐methyltransferase (FOMT) candidates, which were highly expressed in flowers and whose expressional levels were significantly correlated with the content of acacetin. Further experiments validated two FOMTs (CI02A009970 and CI03A006662) were capable of catalyzing the conversion of apigenin into acacetin, and these two genes are possibly responsible acacetin accumulation in disc florets and young leaves, respectively. Furthermore, combined analyses of ancestral chromosome reconstruction and phylogenetic trees revealed the distinct evolutionary fates of the two validated FOMT genes. Our study provides new insights into the biosynthetic pathway of flavonoid compounds in the Asteraceae family and offers a model for tracing the origin and evolutionary routes of single genes. These findings will facilitate in vitro biosynthetic production of flavonoid compounds through cellular and metabolic engineering and expedite molecular breeding of C. indicum cultivars.

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Section: Phylogenetic Tree Divergence Time and Gene Family Evolution ...mentioning

confidence: 99%

The haplotype‐resolved genome of diploid Chrysanthemum indicum unveils new acacetin synthases genes and their evolutionary history

Hou,

Yang,

et al. 2024

The Plant Journal

View full text Add to dashboard Cite

show abstract

Cytological and Molecular Cytogenetic Insights into the Cynara cardunculus Genome

Cited by 1 publication

References 47 publications

The haplotype‐resolved genome of diploid Chrysanthemum indicum unveils new acacetin synthases genes and their evolutionary history

The haplotype‐resolved genome of diploid Chrysanthemum indicum unveils new acacetin synthases genes and their evolutionary history

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