Whereas exogenously acquired proteins are the major source of antigens feeding the MHC class II pathway in antigen-presenting cells, some endogenously expressed antigens also access that pathway but the rules governing such access are poorly understood. Here we address this using Epstein-Barr virus (EBV)-coded nuclear antigen EBNA1, a protein naturally expressed in EBVinfected B lymphoblastoid cell lines (LCLs) and a source of multiple CD4 + T cell epitopes. Using CD4 + T cell clones against three indicator epitopes, we find that two epitopes are weakly displayed on the LCL surface whereas the third is undetectable, a pattern of limited epitope presentation that is maintained even when nuclear expression of EBNA1 is induced to high supraphysiological levels. Inhibitor and siRNA studies show that, of the two epitopes weakly presented under these conditions, one involves macroautophagy, and the second involves antigen delivery to the MHC II pathway by another endogenous route. In contrast, when EBNA1 is expressed as a cytoplasmic protein, all three CD4 epitopes are processed and presented much more efficiently, and all involve macroautophagy. We conclude that EBNA1's nuclear location limits its accessibility to the macroautophagy pathway and, in consequence, limits the level and range of EBNA1 CD4 epitopes naturally displayed on the infected cell surface.autophagy | antigen processing | T cell C lassically, antigen-presenting cells (APCs) initiate help for immune responses against viral infection by processing exogenously acquired viral proteins and displaying their derived epitopes as MHC II:peptide complexes to CD4 + helper T cells. However, viruses that actually infect APCs may also be subject to CD4 + T cell control through direct target cell recognition, that is, if endogenously expressed viral antigens access the MHC II pathway within the infected cell and are processed to CD4 epitopes. Whereas such access might be expected of endogenously expressed proteins that naturally traffic through endolysosomal compartments (1) or are released and reinternalized into endosomes (2), how proteins at other intracellular locations might enter the MHC II pathway is less well understood. One potential route is via macroautophagy (hereafter referred to as autophagy), a degradative process in which the cell sequesters portions of cytoplasm into double-membrane vesicles that then fuse with lysosomes. Thus autophagy appears necessary for the MHC II-restricted presentation of two endogenously expressed model antigens, mouse complement C5 (3) and neomycin phosphotransferase (4). Whereas autophagy usually targets cytoplasmic proteins, analysis of peptides eluted from surface MHC II molecules after inducing autophagy in human B cells suggests that nuclear proteins may also be susceptible to this process (5), and at least one nuclear protein is reportedly presented to CD4 + T cells in this way (6). However, the rules governing endogenously expressed protein, particularly nuclear protein, access into the MHC II pathway remain poorly...