The molecular basis of the recognition of class-I HLA antigens by allo-reactive cytotoxic T lymphocytes (CTL) remains obscure. This article reviews our work in which HLA-B27-specific allo-reactive CTL clones were obtained and their fine specificity was analyzed with a panel of structurally defined HLA-B27 natural variants and site-directed mutants expressed on human and mouse cells. The results have implications for the involvement of endogenous peptides in determining the clonal diversity of HLA-B27 allogeneic responses and the fine specificity of T-cell recognition when HLA-B27 is expressed on different cell types.Class-I HLA molecules act physiologically by presenting antigenic peptides to cytotoxic T lymphocytes (CTL). Peptides are bound into a groove in the class-I molecule consisting of a P-pleated sheet floor topped by 2 long a-helical segments. This structure is contributed by the a 1 and a 2 domains of the molecule (Bjorkman et al., 1987a,b). Polymorphism at the peptide binding site modulates the specificity of peptide binding to class-I molecules.The MHC + peptide complex is recognized by the immunoglobulin-like T-cell antigen receptor (TCR). Class-I molecules are also major targets for allo-reactive CTLs generated upon stimulation of T-cell precursors with allo-geneic stimulator cells.The molecular basis of allo-reactivity is ill-defined so far. Three facts suggest that allo-specific and self-restricted T-cell epitopes must be structurally similar. First, both self-restricted and allo-reactive T-cells used the same TCR. Second, self-restricted CTL displaying cross-reactivity with allo-antigen are not exceptional (Webb and Sprent, 1986). Third, polymorphism at the peptide-binding groove affecting peptide presentation usually also affects allorecognition (Nathenson et al., 1986; Ldpez de Castro, 1989).Several lines of evidence strongly suggest that endogenous peptides from the target cell may actually be involved in allo-recognition. First, X-ray diffraction analyses have shown that crystallized class-I molecule have peptides bound into the groove (Bjorkrnan et al., 1987 a,b). Second, binding of peptides to class-I molecules in the endoplarnic reticulum is necessary for correct folding and transport to the cell surface (Townsend et al., 1989 Cerundolo et al., 1990). Constitutive peptide binding appears to be also necessary for stability of the class-I antigens expressed at the cell surface (Ljunggren et al., 1990). Third, some allo-reactive T-cells can recognize a peptide in the context of the target allo-antigen (Song et Olson et al., 1989;Heath et al., 1989;de Koster et al., 1989;Essaket et al., 1990;Schendel, 1990;Chen et al., 1990). The nature, multiplicity and relative proportions of the endogenous peptides bound to any given class-I molecule is unknown, although MHC-derived peptides are presented by intact MHC molecules in some cases. Furthermore, in allo-recognition the structural polymorphism of the allo-antigen may have by itself antigenic potential and a significant contribution to the allo-a...