Precise measurements of the minimal fluorescence yield (F.) and maximal fluorescence yield (Fm) of a dark-adapted sample are prerequisites for the quantification of other fluorescence parameters. The pulse amplitude-modulated chlorophyll fluorometer (PAM 101 Chlorophyll Fluorometer, Heinz Walz, Effeltrich, Germany) and saturating pulse technique have frequently been used in measuring F. and Fm and in resolving the contributions of photochemical and nonphotochemical quenching to the total fluorescence yield. The extent to which instrument-dependent factors may affect the accurate measurement of F. and Fm is addressed. It is shown that the increase in pulse amplitude-modulated measuring beam intensity at 1.6 and 100 kHz was nonlinear at higher light intensity settings. The implications of this for measurements of F. (1.6 kHz) and Fm (100 kHz) are discussed. It is also demonstrated that underestimation of Fm may result due to saturation of the PAM 101 photodiode by scattered infrared light associated with intense light pulses. In addition, it is shown how sample-dependent factors may affect measurements of F. and Fm in samples with low chlorophyll concentrations, in particular, dilute algal suspensions of Phaeodactylum tricornutum and Chiamydomonas reinhardtii. A technique is presented for the accurate measurement of F. in algal suspensions (<8 gg chlorophyll a mL-1). The importance of examining the saturating pulse transient and Fm level as a function of the damping setting, pulse width, and pulse intensity, and in the presence of 3-(3,4-dichlorophenyl)-1,1-dimethylurea is discussed.The quantitative analysis of Chl a fluorescence quenching has provided information on processes that may be regulating PSII photochemistry during steady-state photosynthesis (7,13,16,19 tion of the primary quinone acceptor (closed trap), photochemical quenching of excited states is eliminated (qp = 0) and the fluorescence yield is maximal. When all reaction centers are capable of photochemistry, qp is maximal (=1) and the fluorescence yield is low. In contrast, a diverse group of components contributes to qN; these essentially reflect the nonphotochemical pathways by which excited states in the antenna can be deactivated. The primary component involves thermal deactivation of excited states and is associated mainly with the establishment of the transthylakoid pH gradient during electron transport and possibly with the xanthophyll cycle (2, 12). Other qN components include state transitions and photoinhibition (4,6,9,15). The extent to which each component contributes to the total amount of qN measured depends on the history of the sample and the conditions under which the measurements are conducted (10, 13).Utilization of the PAM Chl fluorometer (PAM 101 Chlorophyll Fluorometer, Heinz Walz, Effeltrich, Germany) (16) and the saturating light pulse (light-doubling) technique (1) have proven useful in resolving the contributions of both qP and qN to the fluorescence yield observed under different physiological conditions. Th...