“…The results can be used to distinguish the circulation in different parts of the basin, to identify areas that are at higher risk of accumulating substances (Cucco and Umgiesser, 2006;Luick et al, 2007;Wang et al, 2009;Rapaglia et al, 2010) and to determine the main forcing factors and/or processes conditioning residence time itself (Tartinville et al, 1997;Wijeratne and Rydberg, 2007;Plus et al, 2009;Malhadas et al, 2010;Huang et al, 2010;Cavalcante et al, 2011) Salinity can also be successfully simulated in transitional waters (Solidoro et al, 2004;Huang, 2007;Huang et al, 2002) and numerical models can be used to study the spatial and temporal variability of coastal lagoons (Obrador et al, 2008;Lopes et al, 2010;Faure et al, 2010). In addition, numerical models have been used to advance proposals for the zoning of shallow basins (Ferrarin et al, 2008(Ferrarin et al, , 2010, and to evaluate the consequences of different management strategies (Tsihrintzis et al, 2007;Gong et al, 2008;Hakanson and Duarte, 2008). The adoption as normal practice of the calibration and validation of every module of the model, together with the modelling quality assurance procedures, allows the associated error to be accurately estimated and ensures the reliability of numerical models.…”