Myrf is a membrane-bound transcription factor that plays a key role in various biological processes. the intramolecular chaperone Auto-processing (icA) domain of Myrf forms a homo-trimer, which carries out the auto-cleavage of Myrf. the icA homo-trimer-mediated auto-cleavage of Myrf is a prerequisite for its transcription factor function in the nucleus. Recent exome sequencing studies have implicated two MYRF ICA domain mutations (V679A and R695H) in a novel syndromic form of birth defects. It remains unknown whether and how the two mutations impact the transcription factor function of Myrf and, more importantly, how they are pathogenic for congenital anomalies. Here, we show that V679A and R695H cripple the ICA domain, blocking the auto-cleavage of Myrf. Consequently, Myrf-V679A and Myrf-R695H do not exhibit any transcriptional activity. Molecular modeling suggests that V679A and R695H abrogate the auto-cleavage function of the ICA homo-trimer by destabilizing its homo-trimeric assembly. We also found that the ICA homo-trimer can tolerate one copy of Myrf-V679A or Myrf-R695H for its auto-cleavage function, indicating that V679A and R695H are not dominant negatives. Thus, if V679A and R695H in a heterozygous state caused birth defects, it would be via haploinsufficiency of MYRF.Myrf (myelin regulatory factor, previously known as C11orf9 [the human gene] and Mrf [the mouse gene]) is a pleiotropic membrane-bound transcription factor 1-7 . Throughout this paper, MYRF and Myrf refer to the human and mouse genes, respectively. In the murine central nervous system (CNS), Myrf is specifically expressed by oligodendrocytes (OLs) 1,8 . Conditional knockout of Myrf in OL lineage cells led to widespread dysmyelination and severe neurological deficits 1 . Myrf is also indispensable for the life-long maintenance, plasticity, and regeneration of CNS myelin 9-11 . These studies left the impression that Myrf is a "myelin" transcription factor, and hence the name Myrf. We now know that MYRF is also expressed in other tissues such as stomach, lung, heart, ovary, eye, and developing gonads [12][13][14][15] . Consistently, MYRF coding variants have been implicated in both myelin and non-myelin diseases [13][14][15][16][17][18][19] , and whole-body Myrf knockout led to embryonic lethality in mouse independent of OL development 1 . In keeping with myelin-independent functions of Myrf, Myrf orthologs are found and play an important role in organisms without myelin 2,3,6,7 .Myrf is generated as a type-II membrane protein in the endoplasmic reticulum (ER) 4-6 . The Intramolecular Chaperone Auto-processing (ICA) domain is pivotal to the auto-cleavage of Myrf 4,5,20 . The ICA domain forms a homo-trimer, which as an intramolecular chaperone helps Myrf to form a homo-trimer in the ER membrane by chaperoning the formation of a triple β-helix (the intramolecular chaperone function, Fig. 1) 4,5,20-23 . As soon as the triple β-helix is completed, the ICA homo-trimer performs the auto-cleavage reactions that cleave the three P586-S587 peptide bon...