The application of non-contact diagnostic methodologies is the current challenge in the frame of the cultural heritage, referred to as preservation, monitoring and restoration. Inspired by the potential shown by infrared thermography in rock mechanics’ non-destructive applications, this paper presents the results achieved by its use for the quick survey of different weathering types affecting natural stones at historical buildings. Infrared thermography allowed recognizing and mapping the different surface temperatures arising from the presence of efflorescence, subflorescence, alveolization, black crusts and bioweathering at limestone and basalt stones. Infrared data were sided by photogrammetric three-dimensional models of surveyed spots, which provided quantitative data on the thickness of rock affected by mechanical weathering, and key correspondence between the two techniques is highlighted. Achieved results show that infrared outcomes are related to different aspects primarily involving the stone face morphology and color, as well as the environmental conditions at the surveying time. Provided interpretations were validated by field visual inspections, which confirmed the good potential of infrared thermography as a quick weathering diagnostic tool. This study can be therefore considered a starting reference for knowledge development in this scientific field.