With the continuous growth and development of society, the reform of higher education is gradually taking shape, and colleges and universities are taking more and more responsibilities in promoting education. The main element of university management is the student management system, which is very important to the development of the university. Under the objective environment of colleges and universities seeking to expand the scale of running schools and rapid economic and social development, the current student management system has been unable to meet the various needs of contemporary students. The integration of programmable device programming systems offers a student management system distinct advantages in terms of reliability, flexibility, and user-friendly operation. This study focuses on developing an effective and affordable student management system by incorporating a programmable device programming system. To evaluate the system's performance, this paper suggests the utilization of a BP neural network, renowned for its high nonlinear approximation capabilities and effectiveness in handling complex nonlinear functional relationships. The experimental findings highlight a significant contribution, demonstrating that the system achieved a throughput of 180 times per second, with a maximum CPU utilization of 99%. Notably, the system's stability exceeded 95%, contrasting sharply with the traditional student management system's stability at a mere 65%. These results underscore the substantial contribution of the proposed system, showcasing its enhanced stability compared to conventional student management systems.