[1] Increases in atmospheric CO 2 concentration and N deposition are expected to affect methane (CH 4 ) production in soils and emission to the atmosphere, directly through increased plant litter production and indirectly through changes in substrate quality. We examined how CH 4 emission responded to changes in litter quality under increased N and CO 2 , beyond differences in CH 4 resulting from changes in litter production. We used senesced leaves from 13 C-labeled plants of Molinia caerulea grown at elevated and ambient CO 2 and affected by N fertilization to carry out two experiments: a laboratory litter incubation and a pot experiment. N fertilization increased N and decreased C concentrations in litter whereas elevated CO 2 decreased litter quality as reflected in litter C and N concentrations and in the composition of lignin and saturated fatty acids within the litter. In contrast to our expectations, CH 4 production in the laboratory incubation decreased when using litter from N-fertilized plants as substrate, whereas litter from elevated CO 2 had no effect, compared to controls without N and at ambient CO 2 . Owing to high within-treatment variability in CH 4 emissions, none of the treatment effects were reflected in the pot experiment. C mineralization rates were not affected by any of the treatments. The decrease in CH 4 emissions due to indirect effects of N availability through litter quality changes (described here for the first time) contrast direct effects of N fertilization on CH 4 production. The complex interaction of direct effects with indirect effects of increased N on litter quality may potentially result in a net decrease in CH 4 emissions from wetlands in the long term.Citation: Pancotto, V. A., P. M. van Bodegom, J. van Hal, R. S. P. van Logtestijn, P. Blokker, S. Toet, and R. Aerts (2010), N deposition and elevated CO 2 on methane emissions: Differential responses of indirect effects compared to direct effects through litter chemistry feedbacks,