Many croplands in the tropics of China have been converted over the last decades into areca nut plantations due to their high economic returns. This land-use transition was accompanied by changes in agricultural practices such as soil moisture regimes and fertilizer inputs, which may affect soil organic carbon (SOC) and its fractions, especially in tropical soils with low fertility and high nitrogen loss. Yet, how the time since land-use transition from rice paddy cultivation to areca nut plantations affects soil carbon dynamics and their underlying mechanisms in the tropics of China remains elusive. Here, areca nut plantation soils with different ages (2, 5, 10, 14, and 17 years) and paddy fields in the tropical region of China were investigated. The study result indicates that the contents of dissolved organic carbon (DOC), particulate organic carbon (POC), easily oxidized organic carbon (EOC), light organic carbon (LFOC), and microbial biomass carbon (MBC) decreased significantly with increased time since land-use transition from rice paddy cultivation to areca nut plantations. Similarly, the ratios of DOC/SOC, MBC/SOC, POC/SOC, LFOC/SOC, and EOC/SOC decreased significantly with increased time since land-use transition. Compared with the paddy soil, the carbon pool management index decreased by 36.6–76.7% under the areca nut plantations, concluding that increasing the time since land-use transition from rice paddy cultivation to areca nut plantations with high application rates of chemical fertilizers resulted in reduced soil active carbon fractions and SOC supply capacity. Therefore, agricultural practices such as the use of organic fertilizers should be applied to improve the soil’s ability to supply organic carbon in managed plantation ecosystems in the tropics of China.