Background: Although the threat posed by antibacterial resistance (AMR) in urinary tract infections (UTI) is well documented; significant knowledge gaps remain for most countries in sub-Saharan Africa. In this study, we set out to describe the most common uropathogens in Eritrea. The magnitude, trends, and factors associated with AMR and MDR were also assed.
Methods: A retrospective record review of data (January 2010 - 2021) collected from all urine samples from patients from multiple treatment centers in Eritrea and analysed at the microbiology department at the National Reference Laboratory (NHL) was undertaken. Main outcomes included patient characteristics, magnitude of AMR, MDR, and associated patterns and trends. SPSS was used for statistical analysis, and Microsoft Excel was used to plot figures.
Results: Our analysis indicates that 64.9% (1940) of the patients were male; median age (IQR) was 50 years (35-58 years); and > 50% of the age range of patients were in the 36 to 65 year age band. Antibiotic susceptibility was stable over time except for ciprofloxacin (96% in 2004, 97% in 2009, and 94% in 2014; P < 0.05). With decreasing frequency, the most common isolates were UPEC (39.7%, n=1,190); Kliebsiella spp. (10.7%, n=322), Citrobacter spp. (8.7%, n=260), Enterobacter spp.(7.1%, n=213), Proteus spp. (7%, n=209), Streptococcus Group D (6.5%, n=194) and Pseudomonas aeruginosa(6.4%, n=193). The prevalence of AMR in UTI is high with a strong involvement of ESKAPE organisms. A high proportion (2414 (80.5%)) of MDR (and potentially uropathogens from XDR and PDR) was also reported. Furthermore, a MAR index > - 2 in GNB was obtained in 81.1% of the isolates. Although age and the presence of indwelling devices were significantly associated with the probability of MDR in the aPR; the relationship was attenuated in the uPR. Finally, only sex (higher in males: uPR: 2.97) and isolates of a specific genus were associated with MDR. Compared to UPEC, the probability of MDR followed the following sequence: Pseudomonas aeruginosa > (uPR: 16.9) > Proteus spp. (uPR: 5.2) > other GNBs (uPR: 2.1) > Citrobacter spp (uPR: 1.67). Interestingly, all GPBs (S. aureus, Streptococcus group D) had a reduced likelihood of MDR.
Conclusion: We identified a high and increasing prevalence of AMR and MDR in patients with UTI in Eritrea. The findings emphasize the urgent need to address gaps in laboratory infrastructure, AST testing strategies, AMR surveillance, infection control, reporting, and the use of locally generated data to optimize treatment guidelines.