Deep learning-based automated scan plane positioning for brain magnetic resonance imaging

Abstract

Background Manual planning of scans in clinical magnetic resonance imaging (MRI) exhibits poor accuracy, lacks consistency, and is time-consuming. Meanwhile, classical automated scan plane positioning methods that rely on certain assumptions are not accurate or stable enough, and are computationally inefficient for practical application scenarios. This study aims to develop and evaluate an effective, reliable, and accurate deep learning-based framework that incorporates prior physical knowledge for automatic head scan plane positioning in MRI. Methods A deep learning-based end-to-end automated scan plane positioning framework has been developed for MRI head scans. Our model takes a three-dimensional (3D) pre-scan image input, utilizing a cascaded 3D convolutional neural network to detect anatomical landmarks from coarse to fine. And then, with the determined landmarks, accurate scan plane localization can be achieved. A multi-scale spatial information fusion module was employed to aggregate high- and low-resolution features, combined with physically meaningful point regression loss (PRL) function and direction regression loss (DRL) function. Meanwhile, we simulate complex clinical scenarios to design data augmentation strategies. Results Our proposed approach shows good performance on a clinically wide range of 229 MRI head scans, with a point-to-point absolute error (PAE) of 0.872 mm, a point-to-point relative error (PRE) of 0.10%, and an average angular error (AAE) of 0.502°, 0.381°, and 0.675° for the sagittal, transverse, and coronal planes, respectively. Conclusions The proposed deep learning-based automated scan plane positioning shows high efficiency, accuracy and robustness when evaluated on varied clinical head MRI scans with differences in positioning, contrast, noise levels and pathologies.