Human intervention in nature, especially fertilization, greatly increased the amount of N 2 O emission. While nitrogen fertilizer is used to improve nitrogen availability and thus plant growth, one negative side effect is the increased emission of N 2 O. Successful regulation and optimization strategies require detailed knowledge of the processes producing N 2 O in soil. Nitrification and denitrification, the main processes responsible for N 2 O emissions, can be differentiated using isotopic analysis of N 2 O. The interplay between these processes is complex, and studies to unravel the different contributions require isotopic crosslabeling and analytical techniques that enable tracking of the labeled compounds. Fiber-enhanced Raman spectroscopy (FERS) was exploited for sensitive quantification of N 2 O isotopomers alongside N 2 , O 2 , and CO 2 in multigas compositions and in cross-labeling experiments. FERS enabled the selective and sensitive detection of specific molecular vibrations that could be assigned to various isotopomer peaks. The isotopomers 14 N 15 N 16 O (2177 cm −1 ) and 15 N 14 N 16 O (2202 cm −1 ) could be clearly distinguished, allowing site-specific measurements. Also, isotopomers containing different oxygen isotopes, such as 14 N 14 N 17 O, 14 N 14 N 18 O, 15 N 15 N 16 O, and 15 N 14 N 18 O could be identified. A cross-labeling showed the capability of FERS to disentangle the contributions of nitrification and denitrification to the total N 2 O fluxes while quantifying the total sample headspace composition. Overall, the presented results indicate the potential of FERS for isotopic studies of N 2 O, which could provide a deeper understanding of the different pathways of the nitrogen cycle.