We have investigated whether the recently discovered transcription factor, zinc finger BED domain-containing protein 6 (ZBED6), is expressed in insulin-producing cells and, if so, to what extent it affects beta cell function. ZBED6 was translated from a ZC3H11A transcript in which the ZBED6-containing intron was retained. ZBED6 was present in mouse βTC-6 cells and human islets as a double nuclear band at 115/120 kDa and as a single cytoplasmic band at 95-100 kDa, which lacked N-terminal nuclear localization signals. We propose that ZBED6 supports proliferation and survival of beta cells, possibly at the expense of specialized beta cell function-i.e., insulin production-because (i) the nuclear ZBED6 were the predominant forms in rapidly proliferating βTC-6 cells, but not in human islet cells; (ii) down-regulation of ZBED6 in βTC-6 cells resulted in altered morphology, decreased proliferation, a partial S/G2 cell-cycle arrest, increased expression of beta cell-specific genes, and higher rates of apoptosis; (iii) silencing of ZBED6 in the human PANC-1 duct cell line reduced proliferation rates; and (iv) ZBED6 binding was preferentially to genes that control transcription, macromolecule biosynthesis, and apoptosis. Furthermore, it is possible that beta cells, by switching from full length to a truncated form of ZBED6, can decide the subcellular localization of ZBED6, thereby achieving differential ZBED6-mediated transcriptional regulation.Z inc finger BED domain-containing protein 6 (ZBED6) is a recently discovered transcription factor restricted to and highly conserved among placental mammals (1). The intron-less ZBED6 has evolved from a domesticated DNA transposon and is located in one of the first introns of another gene, zinc finger CCCH-type containing 11A (ZC3H11A), with which it has no sequence homology. ZBED6 belongs to the CCCH zinc-finger BEAT and DREF (BED) domain-containing family and contains two DNA-binding BED domains and one hobo-Ac-Tam3 (hATC) dimerization domain. ZBED6 has a broad tissue distribution in mammals (1). In muscle tissue of pigs, it has been observed that ZBED6 negatively regulates insulin-like growth factor-2 (IGF2) transcription (1). A G-to-A transition in intron 3 of IGF2 abrogates the binding site for ZBED6 and leads to a threefold upregulation of IGF2 mRNA expression in skeletal muscle. Mutant pigs lacking the ZBED6 binding site display increased muscle mass, bigger hearts, and less fat deposition (2). Silencing of ZBED6 in mouse C2C12 myoblast cells was associated with elevated IGF2 expression, increased cell proliferation, and a faster wound-healing process. Chromatin immunoprecipitation (ChIP) sequencing using C2C12 cells identified >2,000 ZBED6 binding sites in the genome. Genes associated with ZBED6 binding sites show a highly significant enrichment for certain Gene Ontology (GO) classifications, including development and transcriptional regulation (1).It is possible that ZBED6 controls not only IGF2 expression in muscle, but also the function of insulin-producing beta cells. ...