Quercetin 2,3-dioxygenase (2,3QD) is the only firmly established copper dioxygenase known so far. Depending solely on a mononuclear Cu center, it catalyzes the breakage of the O-heterocycle of flavonols, producing more easily degradable phenolic carboxylic acid ester derivatives. In the enzymatic process, two COC bonds are broken and concomitantly carbon monoxide is released. The x-ray structures of Aspergillus japonicus 2,3QD anaerobically complexed with the substrate kaempferol and the natural substrate quercetin have been determined at 1.90-and 1.75-Å resolution, respectively. Flavonols coordinate to the copper ion as monodentate ligands through their 3OH group. They occupy a shallow and overall hydrophobic cavity proximal to the metal center. As a result of a van der Waals contact between the most outward flavonol A-ring and Pro 164 , a flexible loop in front of the active site becomes partly ordered. Interestingly, flavonols bound to 2,3QD are bent at the C2 atom, which is pyramidalized. The increased local sp 3 character at this atom may stabilize a carbon-centered radical activated for dioxygen attack. I n several aerobic metabolic pathways, O 2 is incorporated into organic compounds through monooxygenase-or dioxygenasecatalyzed reactions (1). For instance, oxygenation is often used to make lipids and particularly aromatic molecules amenable to further biochemical transformations. However, owing to its triplet ground state, O 2 cannot directly react with singlet ground state substrates to produce singlet state products because that would imply a violation of the conservation of the total angular momentum (2). Some form of activation, that is, some way to overcome the spin forbiddenness of the process, is therefore required to make dioxygen react with organic molecules. Often, metal cofactors are used for this purpose, with iron almost invariably being the element of choice for dioxygenases (3). Detailed crystallographic and spectroscopic studies have elucidated how the mononuclear non-heme iron center in these enzymes is exploited to accomplish catalysis (for reviews, see refs. 4 and 5). It seemed that the extradiol-type dioxygenases use an Fe 2ϩ ion to directly ligate and activate O 2 , whereas the intradiol-type enzymes employ Fe 3ϩ to activate the substrate before dioxygen attack.Quercetin 2,3-dioxygenase (2,3QD) belongs to the cupin superfamily (6, 7) and is the only dioxygenase unambiguously known to rely on a mononuclear copper center for activity (8-10). It is a type 2 copper-dependent enzyme expressed by Aspergillus species when grown on complex aromatic compounds, such as rutin or quercetin. 2,3QD catalyzes the cleavage of the O-heteroaromatic ring of flavonols, yielding the corresponding depside (phenolic carboxylic acid ester) and carbon monoxide (Fig. 1). The general lines of a possible mechanism for the enzymatic process have been suggested by the early biochemical work on Aspergillus flavus 2,3QD (11) and by model studies (12)(13)(14). To overcome the singlet-triplet spin barrier, the reacti...