Feline infectious peritonitis (FIP) is a lethal systemic disease caused by FIP virus (FIPV), a virulent mutant of apathogenic feline enteric coronavirus (FECV). We analysed the 3c gene -a proposed virulence marker -in 27 FECV-and 28 FIPV-infected cats. Our findings suggest that functional 3c protein expression is crucial for FECV replication in the gut, but dispensable for systemic FIPV replication. Whilst intact in all FECVs, the 3c gene was mutated in the majority (71.4 %) of FIPVs, but not in all, implying that mutation in 3c is not the (single) cause of FIP. Most cats with FIP had no detectable intestinal feline coronaviruses (FCoVs) and had seemingly cleared the primary FECV infection. In those with detectable intestinal FCoV, the virus always had an intact 3c and seemed to have been acquired by FECV superinfection. Apparently, 3c-inactivated viruses replicate not at all -or only poorly -in the gut, explaining the rare incidence of FIP outbreaks.Feline coronaviruses (FCoVs; family Coronaviridae, order Nidovirales), important pathogens of cats, occur as two distinctly different pathotypes. Feline enteric coronavirus (FECV), the pathotype most common in the field, seems to be confined mainly to the intestinal tract and causes mild, often unapparent enteritis. The virus spreads efficiently via the faecal-oral route and, as infections may persist subclinically for up to a year and perhaps even longer (Herrewegh et al., 1997;Pedersen et al., 2008), FECV prevalence is high, reaching up to 90 % seropositivity in multi-cat environments. The other pathotype, designated feline infectious peritonitis virus (FIPV), occurs only sporadically. In sharp contrast to FECVs, FIPVs do not seem to be well-transmitted and they are highly virulent. By efficiently infecting macrophages and monocytes, FIPVs can escape from the gut and cause a lethal systemic disease with multi-organ involvement, in classical cases accompanied by accumulation of abdominal exudate (ascites; reviewed by de Groot & Horzinek,1995;Haijema et al., 2007;Pedersen, 2009).There is genetic and animal experimental evidence to indicate that the virulent pathotype evolves time and time again from the avirulent one by mutation in individual infected cats. Comparative sequence analysis of FCoV laboratory strains and field variants revealed that FECVs and FIPVs come in genetically closely related pairs, more identical to each other than to other FCoVs (Herrewegh et al., 1995b;Pedersen et al., 1981;Poland et al., 1996;Vennema et al., 1998). Direct support for the 'internal mutation' hypothesis comes from an experiment in which cats with an immunosuppressive feline immunodeficiency virus infection were superinfected with FECV. A number of these animals developed FIP in response. The (systemic) virus variants isolated from the diseased cats were isogenic to the original FECV strain yet, unlike the parental virus, induced FIP readily when inoculated into specific-pathogen-free cats (Poland et al., 1996;Vennema et al., 1998); virulence thus appears to be an acquired gene...