Deterioration of groundwater quality due to drastic human interventions is rising at an alarming rate particularly in lower- and middle-income countries. Yet, limited research effort has been devoted to monitoring and ascertaining groundwater quality. The present study develops a comprehensive irrigation water quality index (IWQI) for rating water quality of shallow and deep aquifers in North Kurdufan province, Sudan. The new approach is developed to overcome the deficiencies of the existing irrigation indices and coming up with a unified decision for classifying water quality for irrigation purposes. Because of these indices like permeability index (PI), sodium absorption ratio (SAR), etc., depending on specific elements, entirely subjective, as well as the great variations in their results, particularly when classifying water quality. Thus, IWQI is created based on eight indices that are generally used to evaluate irrigation water quality, plus three physicochemical parameters have been proven an impact on water quality. The analytic hierarchy process (AHP) is applied to minimize the subjectivity at assign parameter weights under multiple criteria decision analysis tools (MCDA). The spatial distribution of IWQI agrees with the spatial distribution of the most parameters. The results of our approach reveal that the majority of samples are suitable for irrigation uses for both aquifers except few wells in the confined aquifer. Also, noted that there are very variations in the irrigation indices results for classifying water quality. The comparison result showed that the new index robust, fair calculations and has best classifying of water quality.