1-Butyl-3-methylimidazolium chloride (BmimCl), an imidazolium-based
ionic liquid, is considered the representative emerging persistent
aquatic pollutant, and its environmental toxicity has attracted a
growing concern. However, most of the investigations focused on monocultures
or a single organism, with little information available on the complex
syntrophic consortium that dominates the complex and successional
biochemical processes, such as anaerobic digestion. In this study,
the effect of BmimCl at environmentally relevant levels on glucose
anaerobic digestion was therefore investigated in several laboratory-scale
mesophilic anaerobic digesters to provide such support. Experimental
results showed that BmimCl at 1–20 mg/L inhibited the methane
production rate by 3.50–31.03%, and 20 mg/L BmimCl inhibited
butyrate, hydrogen, and acetate biotransformation by 14.29%, 36.36%,
and 11.57%, respectively. Toxicological mechanism studies revealed
that extracellular polymeric substances (EPSs) adsorbed and accumulated
BmimCl through carboxyl, amino, and hydroxyl groups, which destroyed
the EPSs’ conformational structure, thereby leading to the
inactivation of microbial cells. MiSeq sequencing data indicated that
the abundance of Clostridium_sensu_stricto_1, Bacteroides, and Methanothrix decreased
by 6.01%, 7.02%, and 18.45%, respectively, in response to 20 mg/L
BmimCl. Molecular ecological network analysis showed that compared
with the control, the lower network complexity, fewer keystone taxa,
and fewer associations among microbial taxa were found in the BmimCl-present
digester, indicating the reduced stability of the microbial community.