TL. Multidisciplinary cycles for protein engineering: Site-directcd mutagenesis and X-ray structural studies of aspartic proteinases. Scand J Clin Lab Invest 1992; 52 (Suppl. 210): 39-50.The specificity and pH profile of aspartic proteinases have evolved to include not only pepsin with a broad specificity and an optimal activity in acid media, but also rcnin, with high specificity for angiotensinogen and activity close to neutral pH. Comparisons of the structures and catalytic activities of aspartic protcinases provide helpful clues for engineering new activity profiles. We illustrate an approach that involves recombinant DNA techniques, biochcmistry, structure determination and biocomputing. We use the 3-D structures of inhibitor complexes of several aspartic proteinases to define likely intermediates and specificity sub-sites. The multidisciplinary research is organiscd as cycles, in which each cycle tests a design hypothesis proposed in the previous cycle. We use one member of the aspartic proteinase family, chymosin, to illustrate these ideas in engincering enzymes with altered pH optima and spccificitics.Aspartic protcinascs are distributcd widcly in eukaryotic systems whcrc thcy play roles in relatively non-specific digestion of protcins, for example pepsin, and also as spccific activators of physiological processcs, such as renin's role in hypcrtcnsion. Many of the aspartic proteinascs have been exploited commercially in protein proccssing, and the specific enzymes have provcd uscful targets in drug design. These industrial intcrests have stimulated extensive fundamental rcsearch into their structure and function. They now provide excellent case studies of the application of structural information to both enzyme cnginccring and drug design.Of the aspartic proteinases, chymosin has becn amongst h e most studied as is demonstrated by the extensive work of Foltmann [I]. In this paper we use chymosin to describe the role of structure in protein design, and illustrate this with the extensive work on expression, site-directed mutagenesis, bio-39 Scand J Clin Lab Invest Downloaded from informahealthcare.com by University of Otago on 07/01/15 For personal use only. 40 J.E. Pitts et al. chemical characterization, X-ray structure analysis and modelling carried out in our laboratories at Birkbeck. However, we use information concerning the binding of inhibitors, especially to rcnins, to define the probable binding sites of substrates in the chymosin structure. Chymosin (rennin;EC 3.4.23.4) is synthesised in the fourth stomach of the unweaned calf where it acts to initiate milk clotting by the specific cleavage of K-casein between thePhe105-Met106 bond [l-41 and this high specificity forms the basis for its extensive use in the process of cheese making. Other enzymes have been used as rennet substitutes including the microbial enzymes from Mucor pusillus, M . m i e h e i , E n d o t h i a parasitica, lrpex lactis and Aspergillus oryzae [5]. The A.oryzae aspartic proteinase has also been used in the baking industry to ...