The G 1 cyclin Cln3 of the yeast Saccharomyces cerevisiae is rapidly degraded by the ubiquitin-proteasome pathway. This process is triggered by p34
CDC28-dependent phosphorylation of Cln3. Here we demonstrate that the molecular chaperone Ydj1, a DnaJ homolog, is required for this phosphorylation. In a ydj1 mutant at the nonpermissive temperature, both phosphorylation and degradation of Cln3 were deficient. No change was seen upon inactivation of Sis1, another DnaJ homolog. The phosphorylation defect in the ydj1 mutant was specific to Cln3, because no reduction in the phosphorylation of Cln2 or histone H1, which also requires p34
CDC28, was observed. Ydj1 was required for Cln3 phosphorylation and degradation rather than for the proper folding of this cyclin, since Cln3 produced in the ydj1 mutant was fully active in the stimulation of p34 CDC28 histone kinase activity. Moreover, Ydj1 directly associates with Cln3 in close proximity to the segment that is phosphorylated and signals degradation. Thus, binding of Ydj1 to this domain of Cln3 seems to be essential for the phosphorylation and breakdown of this cyclin. In a cell-free system, purified Ydj1 stimulated the p34
CDC28-dependent phosphorylation of the C-terminal segment of Cln3 and did not affect phosphorylation of Cln2 (as was found in vivo). The reconstitution of this process with pure components provides evidence of a direct role for the chaperone in the phosphorylation of Cln3.In Escherichia coli, mitochondria, and the cytosol of eukaryotic cells, members of DnaJ family of molecular chaperones function together with Hsp70s in protein folding and translocation across membranes (12). Recent studies have demonstrated that the chaperones are also essential for the rapid degradation of certain abnormal proteins in both prokaryotes and eukaryotes (16,24). These short-lived proteins appear to associate with DnaJ and other chaperones prior to their degradation (16,24). Since chaperones bind specifically to unfolded polypeptides, they may participate in the recognition of abnormal proteins by the degradative machinery. The present studies were undertaken to determine whether molecular chaperones may also be important in the degradation of regulatory proteins.To examine this possibility, we studied whether a DnaJ homolog in Saccharomyces cerevisiae, Ydj1, functions in the rapid ubiquitin-dependent breakdown of the G 1 cyclin Cln3. Cln3 is an important regulator of the Start checkpoint in the yeast cell cycle (7). Cln3 associates with and activates p34 CDC28 kinase in early G 1 phase, which leads to the synthesis of other G 1 cyclins (11, 24a, 25), thus allowing the transition from G 1 to S phase. This interaction occurs through the N-terminal segment of Cln3, which contains the cyclin box, a region conserved among different cyclins. Moreover, this N-terminal segment of Cln3 alone is sufficient for the stimulation of the kinase. p34CDC28 in turn phosphorylates Cln3, which triggers its ubiquitination, leading to the rapid degradation of Cln3 (8,28). This critical pho...