We constructed chimeric dengue type 2/type 1 (DEN-2/DEN-1) viruses containing the nonstructural genes of DEN-2 16681 virus or its vaccine derivative, strain PDK-53, and the structural genes (encoding capsid protein, premembrane protein, and envelope glycoprotein) of DEN-1 16007 virus or its vaccine derivative, strain PDK-13. We previously reported that attenuation markers of DEN-2 PDK-53 virus were encoded by genetic loci The viral structural proteins, C, prM/M, and E, and the nonstructural proteins, NS1 to NS5, are translated as a single polyprotein and processed by cellular and viral proteases (12,49).Transmitted by Aedes aegypti mosquitoes to humans, DEN viruses cause tens of millions of cases, ranging from dengue fever to the sometimes fatal dengue hemorrhagic fever/dengue shock syndrome (DHF/DSS), in tropical and subtropical regions of the world every year (42). Epidemiologic studies have shown that individuals who experience a secondary infection with a DEN virus serotype that differs from that of the previous infection are at higher risk of developing DHF/DSS (21). Therefore, an efficacious tetravalent vaccine is needed to provide solid and long-term immunity against all four DEN virus serotypes. Four parental DEN virus serotypes (DEN-1 16007, DEN-2 16681, DEN-3 16562, and DEN-4 1036) were passaged in cell cultures to obtain attenuated vaccine candidates at Mahidol University, Bangkok, Thailand (51). Human clinical trials have been conducted in Thailand and the United States (4-6, 17, 48). These attenuated viruses are currently the most promising DEN virus vaccine candidates in terms of immunogenicity and safety in humans. The Mahidol vaccine candidates DEN-1 PDK-13, DEN-2 PDK-53, DEN-3 PGMK-30/FRhL-3, and DEN-4 PDK-48 viruses have 50% minimum infectious dose values of 10 4 , 5, 3,500, and 150 PFU, respectively, in humans (4). The candidate DEN-2 PDK-53 virus vaccine, which has the lowest infectious dose in humans, is strongly immunogenic and has produced no untoward clinical symptoms. The DEN-1 PDK-13 virus vaccine, on the other hand, has a high infectious dose and has resulted in minimal reactogenicity with lower seroconversion rate in human trials (4). While only one immunization with DEN-2 PDK-53 virus was required to achieve 100% seroconversion, a DEN-1 PDK-13 virus booster was needed to achieve the same seroconversion rate.An understanding of the attenuation markers of the candidate DEN-2 PDK-53 virus vaccine should permit engineering of improved DEN virus vaccines. For this purpose, infectious cDNA clones of DEN-2 16681 and PDK-53 viruses (25), as well as recombinant DEN-2 16681/PDK-53 viruses (10), have been constructed. The uncloned PDK-53 virus vaccine contains a mixture of two genotypic variants (25), designated PDK53-E and PDK53-V in this report. The PDK53-V variant contains all nine PDK-53 virus vaccine-specific nucleotide mutations, including the Glu-to-Val mutation at amino acid position NS3-250. The PDK53-E variant contains eight of the nine mutations of the PDK-53 vaccine and the NS3-250-...