The characterization of DNase II and DNase I activity was undertaken to discriminate their different roles in physiological nuclear degradation during lens fiber cell differentiation. The activity of both nucleases determined in a new assay allows to discriminate DNase II from DNase I in the same extract. In fibers, both types of nuclease activities are found and appear higher than in epithelial cells. Specific polyclonal antibodies directed against these two nucleases reveal by Western blot analysis the presence of various DNase isoforms. DNase II like-nuclease, present in fibers, is represented by three major bands (60, 23, and 18 kDa), which are not detected, at least for two of them (60 and 23 kDa), in epithelial cells. DNase I like-nuclease pattern in fiber cells shows a single 32-kDa band, while several bands can be detected in epithelial cells. Immunocytochemistry studies show both nucleases present in lens cell sections. DNase II is, as usual, in cytoplasm of epithelial cells, but it appears strikingly concentrated in the nuclei of fibers. DNase I is always concentrated in nuclei of epithelial and fiber cells. DNA degradation observed in agarose gels shows that DNase II-activating medium cleaves the DNA from fiber cells more efficiently than DNase I-activating buffer. In addition, DNase II antibody is able to prevent this degradation. These results suggest a specific involvement of DNase II in nuclear degradation during lens cell differentiation.Apoptosis or programmed cell death occurs in many physiological and pathological situations where selection of cells is required (1-4). In 1980, a landmark study (5) revealed that glucocorticoids induced extensive DNA degradation in rat thymocytes in vitro at the onset of cell death. DNA cleavage occurred in a very specific pattern producing fragments of DNA that were multiples of 180 -200 base pairs. This indicated that the chromatin was cleaved at the linker DNA between nucleosomic cores. The characteristic ladder was first shown by Hewish and Burgoyne (6) To date, three different endonucleases have been involved in DNA fragmentation leading to nucleosomal appearance. Some authors, such as Peitsch et al. (8), claimed that the well characterized pancreatic deoxyribonuclease (DNase I) was constitutively expressed in cells of tissues potentially primed for apoptosis. This 30-kDa nuclease, active at neutral pH, could be responsible for DNA cleavage into oligonucleosomes during cell death. On the other hand, Barry and Eastman (9), studying apoptosis in Chinese hamster ovary cells, were unable to detect a Ca 2ϩ -Mg 2ϩ -dependent endonuclease. Instead, they identified another endonuclease, which was cation-independent, with optimal activity at pH 5. This enzyme was proposed to be DNase II (9, 10). Finally, Hughes and Cidlowski (11) showed a lower molecular weight nuclease, an 18-kDa peptide (termed NUC 18), which was activated by Ca 2ϩ and Mg 2ϩ and related to cyclophilin (12). This peptide appears as a novel enzyme whose activity correlates with apoptosis in thymocy...