The objective of the present work is to design the control systems required to hold altitude and heading in severe atmospheric disturbances in cruise flight for the Unmanned Airplane for Ecological Conservation using modern control design techniques. The airplane mathematical model in open-loop was defined by the linearized longitudinal and lateraldirectional equations of motion. Different control systems were designed based on modern control design techniques. These are the eigenstructure assignment or polo-placement technique, linear quadratic design with full state feedback, and linear quadratic Gaussian design. To verify the design of control systems, simulations of the open-loop and closed-loop systems were performed, and each control system was tested. The atmospheric disturbances considered were the gust disturbance, which was idealized by the one-minus-cosine gust profile, and the atmospheric turbulence, which was modeled by Dryden's function. The control systems designed to hold in-flight altitude and heading achieved their purpose. In any simulation, the maximum load factor, the stall speed and the maximum dive speed were not achieved. Nomenclature A, B, C = state, control, and gust disturbance matrices a = coefficients of open-loop plant matrix characteristic equation a = coefficients of desired closed-loop characteristic equation d = gust diameter g = constant vector H = flight altitude K= feedback gain L k = steady-state Kalman gain L T = correlation length of turbulence n y , n z = load factors in y and z axes Q, R = weighting matrices for linear quadratic regulator problem Q n , R n = weighting matrices in the algebraic filter Riccati equation P = Riccati matrix p, q, r = roll, pitch, and yaw rates p g , q g , r g = rotary gust velocities about x, y, and z axes t = time u, v, w = longitudinal, lateral and vertical components of velocity u e , v e , w e = longitudinal, lateral and vertical components of gust velocity respect to earth axes u g , v g , w g = longitudinal, lateral and vertical components of gust velocity respect to wind airframe axes u o = initial forward speed v go , w go = maximum lateral and vertical gust velocities w A , w B = weighting factors