2010
DOI: 10.1371/journal.pone.0010914
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Design of Group IIA Secreted/Synovial Phospholipase A2 Inhibitors: An Oxadiazolone Derivative Suppresses Chondrocyte Prostaglandin E2 Secretion

Abstract: Group IIA secreted/synovial phospholipase A2 (GIIAPLA2) is an enzyme involved in the synthesis of eicosanoids such as prostaglandin E2 (PGE2), the main eicosanoid contributing to pain and inflammation in rheumatic diseases. We designed, by molecular modeling, 7 novel analogs of 3-{4-[5(indol-1-yl)pentoxy]benzyl}-4H-1,2,4-oxadiazol-5-one, denoted C1, an inhibitor of the GIIAPLA2 enzyme. We report the results of molecular dynamics studies of the complexes between these derivatives and GIIAPLA2, along with their … Show more

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“…These variations might create different electrostatic environments, thereby influencing the results for residues adopting alternative conformations or interacting with phospholipids carrying different charges. For instance, while Lys62 and Arg33 have been recognized to form important interactions, 17,[89][90][91][92] their identification in each case is largely attributed to the aforementioned factors. Furthermore, since the reaction pathways encompass dissimilar charge distributions in the QM region, the electrostatic contributions are also bound to vary.…”
Section: Chemical Science Accepted Manuscriptmentioning
confidence: 99%
“…These variations might create different electrostatic environments, thereby influencing the results for residues adopting alternative conformations or interacting with phospholipids carrying different charges. For instance, while Lys62 and Arg33 have been recognized to form important interactions, 17,[89][90][91][92] their identification in each case is largely attributed to the aforementioned factors. Furthermore, since the reaction pathways encompass dissimilar charge distributions in the QM region, the electrostatic contributions are also bound to vary.…”
Section: Chemical Science Accepted Manuscriptmentioning
confidence: 99%